miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 5' -51 NC_001875.2 + 5316 1.06 0.009448
Target:  5'- gCUGACGAGCACGUUGCGGCUCAAAAAc -3'
miRNA:   3'- -GACUGCUCGUGCAACGCCGAGUUUUU- -5'
6731 5' -51 NC_001875.2 + 6257 0.67 0.974915
Target:  5'- uUGACGAGCAguguuUGUggGCGGCUa----- -3'
miRNA:   3'- gACUGCUCGU-----GCAa-CGCCGAguuuuu -5'
6731 5' -51 NC_001875.2 + 9775 0.67 0.96572
Target:  5'- gUGACGuGCACGUgaaGCcGCUgGAGGAg -3'
miRNA:   3'- gACUGCuCGUGCAa--CGcCGAgUUUUU- -5'
6731 5' -51 NC_001875.2 + 10453 0.71 0.854179
Target:  5'- uUGACGcGGCGCGgcgGCGcGCUCAGu-- -3'
miRNA:   3'- gACUGC-UCGUGCaa-CGC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 21262 0.66 0.986039
Target:  5'- -aGGCGcgcGCGCGgcGCGGCUaCGAGc- -3'
miRNA:   3'- gaCUGCu--CGUGCaaCGCCGA-GUUUuu -5'
6731 5' -51 NC_001875.2 + 26094 0.69 0.912674
Target:  5'- aUGGCGGGCGCG--GCGGCcaccaCGAAAAa -3'
miRNA:   3'- gACUGCUCGUGCaaCGCCGa----GUUUUU- -5'
6731 5' -51 NC_001875.2 + 28274 0.69 0.930319
Target:  5'- -aGACGAGCACGUgcauuauuuacaUGCGGUg------ -3'
miRNA:   3'- gaCUGCUCGUGCA------------ACGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 29007 0.68 0.954379
Target:  5'- cCUG-CGGGCACGUgGUGGCgugcggCAAGu- -3'
miRNA:   3'- -GACuGCUCGUGCAaCGCCGa-----GUUUuu -5'
6731 5' -51 NC_001875.2 + 30672 0.66 0.979951
Target:  5'- aCUGACGucguGCACGUgGCGuGCUUu---- -3'
miRNA:   3'- -GACUGCu---CGUGCAaCGC-CGAGuuuuu -5'
6731 5' -51 NC_001875.2 + 33315 0.7 0.892636
Target:  5'- uUGGCGAGCGCGUgGCGuuGC-CAAGGGu -3'
miRNA:   3'- gACUGCUCGUGCAaCGC--CGaGUUUUU- -5'
6731 5' -51 NC_001875.2 + 37761 0.71 0.854179
Target:  5'- -cGGCGAGCACGccgccgUGCGGC-CGGc-- -3'
miRNA:   3'- gaCUGCUCGUGCa-----ACGCCGaGUUuuu -5'
6731 5' -51 NC_001875.2 + 38304 0.66 0.97901
Target:  5'- gUGGCGAGCGCcgacaaggccgGCGGCaugCAAGAc -3'
miRNA:   3'- gACUGCUCGUGcaa--------CGCCGa--GUUUUu -5'
6731 5' -51 NC_001875.2 + 40857 0.7 0.906258
Target:  5'- aUGACGcGCGCGcgGCGGUUCcAAAu -3'
miRNA:   3'- gACUGCuCGUGCaaCGCCGAGuUUUu -5'
6731 5' -51 NC_001875.2 + 42018 0.71 0.862351
Target:  5'- -gGACGAGCAguUGUUGCaGCUCGc--- -3'
miRNA:   3'- gaCUGCUCGU--GCAACGcCGAGUuuuu -5'
6731 5' -51 NC_001875.2 + 47624 0.66 0.977537
Target:  5'- -gGACGAGCGCGc-GCGGCc------ -3'
miRNA:   3'- gaCUGCUCGUGCaaCGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 50082 0.66 0.982166
Target:  5'- gCUGAUuAGCGCGc-GCGGCUCcGAc- -3'
miRNA:   3'- -GACUGcUCGUGCaaCGCCGAGuUUuu -5'
6731 5' -51 NC_001875.2 + 50332 0.67 0.972077
Target:  5'- -aGACGAGCugGUggUGuCGGCgUCGu--- -3'
miRNA:   3'- gaCUGCUCGugCA--AC-GCCG-AGUuuuu -5'
6731 5' -51 NC_001875.2 + 52174 0.7 0.877227
Target:  5'- uUGACGcGCACGUccgacacUGCGuGCUCAGc-- -3'
miRNA:   3'- gACUGCuCGUGCA-------ACGC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 55510 0.7 0.883967
Target:  5'- gUGGCGcAGCACcugcucgaugGCGGCUCGGAAu -3'
miRNA:   3'- gACUGC-UCGUGcaa-------CGCCGAGUUUUu -5'
6731 5' -51 NC_001875.2 + 58398 0.69 0.930319
Target:  5'- gCUGcACGAGCGCcaacuGUUGCGGCggCGGc-- -3'
miRNA:   3'- -GAC-UGCUCGUG-----CAACGCCGa-GUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.