Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6731 | 5' | -51 | NC_001875.2 | + | 129186 | 0.72 | 0.781391 |
Target: 5'- uCUGGCGAGCGCGagcGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa-CGCCGaguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 128772 | 0.69 | 0.935662 |
Target: 5'- aUGGCGugGGCGCGUUGgcguuguuggacCGGCUCAu--- -3' miRNA: 3'- gACUGC--UCGUGCAAC------------GCCGAGUuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 125331 | 0.69 | 0.918824 |
Target: 5'- aUGuuGGGCgGCGUUGUGGCUUAAu-- -3' miRNA: 3'- gACugCUCG-UGCAACGCCGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 121985 | 0.74 | 0.688326 |
Target: 5'- gCUGGCGGGCACGUUGCccGCcagCGAAAu -3' miRNA: 3'- -GACUGCUCGUGCAACGc-CGa--GUUUUu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 121544 | 0.66 | 0.977537 |
Target: 5'- -cGAUGGGCACGcagGUGGC-CGAGu- -3' miRNA: 3'- gaCUGCUCGUGCaa-CGCCGaGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 120918 | 0.66 | 0.984193 |
Target: 5'- -cGACGAGCACuucGCGGUUgGAc-- -3' miRNA: 3'- gaCUGCUCGUGcaaCGCCGAgUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 113348 | 0.67 | 0.970267 |
Target: 5'- gCUGGUGGGCACGUcgcagcgcgucacggUGCGGCUg----- -3' miRNA: 3'- -GACUGCUCGUGCA---------------ACGCCGAguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 110306 | 0.68 | 0.940738 |
Target: 5'- -cGACGAGCGCGacGCGGUgcugCGGu-- -3' miRNA: 3'- gaCUGCUCGUGCaaCGCCGa---GUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 108239 | 0.68 | 0.945548 |
Target: 5'- -gGACGAGCGCGUcaacgggcUGCuGGC-CAAGc- -3' miRNA: 3'- gaCUGCUCGUGCA--------ACG-CCGaGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 105837 | 0.69 | 0.918824 |
Target: 5'- -gGACGGGCGCGguguguggGUGGCcggCAAGGAg -3' miRNA: 3'- gaCUGCUCGUGCaa------CGCCGa--GUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 102432 | 0.69 | 0.930319 |
Target: 5'- -cGugGugaAGUACGacGCGGCUCAAAGGu -3' miRNA: 3'- gaCugC---UCGUGCaaCGCCGAGUUUUU- -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 97889 | 0.7 | 0.877986 |
Target: 5'- -cGcACGGGCACGUUGCgGGCgUCGGc-- -3' miRNA: 3'- gaC-UGCUCGUGCAACG-CCG-AGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 95553 | 0.79 | 0.446407 |
Target: 5'- -cGACGccGGCGCGcUGCGGCUCGAAu- -3' miRNA: 3'- gaCUGC--UCGUGCaACGCCGAGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 92872 | 0.66 | 0.982166 |
Target: 5'- gCUGGCGGGCA----GCGcGCUCAAGu- -3' miRNA: 3'- -GACUGCUCGUgcaaCGC-CGAGUUUuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 90912 | 0.67 | 0.962187 |
Target: 5'- uUGACGGGCACGcagccUGCGGUg------ -3' miRNA: 3'- gACUGCUCGUGCa----ACGCCGaguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 88411 | 0.7 | 0.892636 |
Target: 5'- uCUGACGAGUACGgcggcaGCGGCg------ -3' miRNA: 3'- -GACUGCUCGUGCaa----CGCCGaguuuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 85242 | 0.66 | 0.984193 |
Target: 5'- -cGACGAGCGCGgguucCGcGCUCGGc-- -3' miRNA: 3'- gaCUGCUCGUGCaac--GC-CGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 79964 | 0.68 | 0.958409 |
Target: 5'- aUGcCGGGCACGUUcaaGCGGCcCGAc-- -3' miRNA: 3'- gACuGCUCGUGCAA---CGCCGaGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 79770 | 0.66 | 0.977537 |
Target: 5'- aCUGGac-GCGCGacUGCGGCUCAAc-- -3' miRNA: 3'- -GACUgcuCGUGCa-ACGCCGAGUUuuu -5' |
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6731 | 5' | -51 | NC_001875.2 | + | 66217 | 0.71 | 0.854179 |
Target: 5'- -gGGCGAGCACGcgcGCGGCgUCGGc-- -3' miRNA: 3'- gaCUGCUCGUGCaa-CGCCG-AGUUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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