miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 6780 0.69 0.743134
Target:  5'- cCGAUCgcugGcACGAguACACCGCGUGCgGCg -3'
miRNA:   3'- -GCUGGa---C-UGCU--UGUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 108420 0.69 0.752849
Target:  5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3'
miRNA:   3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 130552 0.69 0.762456
Target:  5'- gCGAcCCUGcuuuucggguGCGAACGCucucgaaaggCGCGUGCUACUu -3'
miRNA:   3'- -GCU-GGAC----------UGCUUGUG----------GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 60237 0.69 0.762456
Target:  5'- -aACaaaUGGCGAGCACgaGCGCGCUAg- -3'
miRNA:   3'- gcUGg--ACUGCUUGUGg-CGCGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 110310 0.69 0.762456
Target:  5'- -cGCCcGACGAGCGCgaCGCGgUGCUGCg -3'
miRNA:   3'- gcUGGaCUGCUUGUG--GCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 52730 0.69 0.771003
Target:  5'- aCGAUC-GGCGGAuCGCCagcauuuGCGCGCUGCc -3'
miRNA:   3'- -GCUGGaCUGCUU-GUGG-------CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 32226 0.69 0.771946
Target:  5'- -aGCCUGcACGAGCGCCauuuugcgguacGCGCGCgcacGCUc -3'
miRNA:   3'- gcUGGAC-UGCUUGUGG------------CGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 74008 0.69 0.771946
Target:  5'- gGACCgGuACGAgaGCACCGCgGCGC-ACa -3'
miRNA:   3'- gCUGGaC-UGCU--UGUGGCG-CGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 126324 0.68 0.79054
Target:  5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3'
miRNA:   3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 31915 0.68 0.79054
Target:  5'- uGGCC--GCGcuGCACCGCGCGCggGCc -3'
miRNA:   3'- gCUGGacUGCu-UGUGGCGCGCGa-UGa -5'
6732 5' -55.7 NC_001875.2 + 32787 0.68 0.79054
Target:  5'- gCGGCgUgGGCGGGCGCCGCGC-CgGCa -3'
miRNA:   3'- -GCUGgA-CUGCUUGUGGCGCGcGaUGa -5'
6732 5' -55.7 NC_001875.2 + 90021 0.68 0.79054
Target:  5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3'
miRNA:   3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5'
6732 5' -55.7 NC_001875.2 + 37211 0.68 0.799624
Target:  5'- -aGCCUGGCGcAGCggugcagcaaGCCGCugccGCGCUACa -3'
miRNA:   3'- gcUGGACUGC-UUG----------UGGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 57504 0.68 0.799624
Target:  5'- aCGuACUUG-CGGuuuCGCCGCGCGCaGCg -3'
miRNA:   3'- -GC-UGGACuGCUu--GUGGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 49949 0.68 0.799624
Target:  5'- ---gCUGGucgucgGAGCugCGCGCGCUGCUg -3'
miRNA:   3'- gcugGACUg-----CUUGugGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 37895 0.68 0.80767
Target:  5'- gCGGCuugCUGGCGcggcacuGGCACCGCGCGUguuggACg -3'
miRNA:   3'- -GCUG---GACUGC-------UUGUGGCGCGCGa----UGa -5'
6732 5' -55.7 NC_001875.2 + 17091 0.68 0.808556
Target:  5'- aGGCCgGGCaa--GCCGCGCGCcACUg -3'
miRNA:   3'- gCUGGaCUGcuugUGGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 7005 0.68 0.808556
Target:  5'- uCGACgUGGCGcgccaguugcugGACguaagcgaggugGCCGCGCGCUugUc -3'
miRNA:   3'- -GCUGgACUGC------------UUG------------UGGCGCGCGAugA- -5'
6732 5' -55.7 NC_001875.2 + 58621 0.68 0.808556
Target:  5'- -aGCCUGACGGcCAgUGCugagGCGCUGCa -3'
miRNA:   3'- gcUGGACUGCUuGUgGCG----CGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 61583 0.68 0.808556
Target:  5'- cCGACgagGugGAGguagcgcccgauCACCGCGCGCUGg- -3'
miRNA:   3'- -GCUGga-CugCUU------------GUGGCGCGCGAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.