miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 107392 0.66 0.899056
Target:  5'- uGACaUGGCGAACGCCGauucgcucgacgccCGCGCg--- -3'
miRNA:   3'- gCUGgACUGCUUGUGGC--------------GCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 102754 0.71 0.662668
Target:  5'- gCGGCCUuugcACGAGCGCUGCaGCGCUucaaaACUg -3'
miRNA:   3'- -GCUGGAc---UGCUUGUGGCG-CGCGA-----UGA- -5'
6732 5' -55.7 NC_001875.2 + 102475 0.68 0.825926
Target:  5'- aCGAgCUGACGAGCGCgauuaguuCGgGCUACg -3'
miRNA:   3'- -GCUgGACUGCUUGUGgc------GCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 101070 0.76 0.374718
Target:  5'- gCGAgCgcGGCGAGCGucuCCGCGCGCUGCg -3'
miRNA:   3'- -GCUgGa-CUGCUUGU---GGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 100617 0.66 0.88144
Target:  5'- gCGGCCgcuguuugccucgugGAUGAGCAgCGUGCGCg--- -3'
miRNA:   3'- -GCUGGa--------------CUGCUUGUgGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 99279 0.77 0.3352
Target:  5'- gCGACCUGGgGAAUugCGaCGCGUUGCc -3'
miRNA:   3'- -GCUGGACUgCUUGugGC-GCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 98854 0.72 0.611266
Target:  5'- aCGACCgcgaGCGcAACACCGUGCGCg--- -3'
miRNA:   3'- -GCUGGac--UGC-UUGUGGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 98309 0.73 0.550169
Target:  5'- aCGGCCcGACGuGCGCCGCcCGCUGa- -3'
miRNA:   3'- -GCUGGaCUGCuUGUGGCGcGCGAUga -5'
6732 5' -55.7 NC_001875.2 + 97732 0.68 0.808556
Target:  5'- aGACC--GCGAGCG-CGCGCGCUcguGCa -3'
miRNA:   3'- gCUGGacUGCUUGUgGCGCGCGA---UGa -5'
6732 5' -55.7 NC_001875.2 + 96483 0.68 0.817326
Target:  5'- cCGGCa--ACGGGCgGCCGCGCGUUAUa -3'
miRNA:   3'- -GCUGgacUGCUUG-UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95736 0.66 0.913322
Target:  5'- uGAgC-GGCGccgcCGCCGCGUGCUGCc -3'
miRNA:   3'- gCUgGaCUGCuu--GUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 95595 0.68 0.825926
Target:  5'- gGACCUGGUGGACGacaCGgGCGCcGCg -3'
miRNA:   3'- gCUGGACUGCUUGUg--GCgCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 95567 0.71 0.652404
Target:  5'- aGGCCUuaccuuuGCG-ACGCCgGCGCGCUGCg -3'
miRNA:   3'- gCUGGAc------UGCuUGUGG-CGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 93669 0.66 0.907274
Target:  5'- aCGACCUGcguCGGGCGCU-CGCGUUcACg -3'
miRNA:   3'- -GCUGGACu--GCUUGUGGcGCGCGA-UGa -5'
6732 5' -55.7 NC_001875.2 + 90354 0.68 0.816457
Target:  5'- cCGACCggccGGCGcAgaccacacaagacACGCCGCGCGCgccGCa -3'
miRNA:   3'- -GCUGGa---CUGC-U-------------UGUGGCGCGCGa--UGa -5'
6732 5' -55.7 NC_001875.2 + 90021 0.68 0.79054
Target:  5'- cCGACCUcaaGAGCucGCCGCGCGCcauguUGCa -3'
miRNA:   3'- -GCUGGAcugCUUG--UGGCGCGCG-----AUGa -5'
6732 5' -55.7 NC_001875.2 + 88414 0.66 0.905413
Target:  5'- uCG-UCUGACGAguacggcggcagcgGCGgCGCGCGCcGCUu -3'
miRNA:   3'- -GCuGGACUGCU--------------UGUgGCGCGCGaUGA- -5'
6732 5' -55.7 NC_001875.2 + 85435 0.7 0.719436
Target:  5'- gGACgUGuccacauccacguCGGACACCGUGuCGCUGCa -3'
miRNA:   3'- gCUGgACu------------GCUUGUGGCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 85206 0.66 0.900987
Target:  5'- uGAgCcGACGGGcCGCCGCGCGgUAg- -3'
miRNA:   3'- gCUgGaCUGCUU-GUGGCGCGCgAUga -5'
6732 5' -55.7 NC_001875.2 + 83410 0.66 0.900987
Target:  5'- -cGCCaUGGCGccgcaaaACUGCGCGCUGCc -3'
miRNA:   3'- gcUGG-ACUGCuug----UGGCGCGCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.