miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 110449 0.75 0.228818
Target:  5'- aGCACCGUcucggcgacgGGGCAgccCGCGCGCUccGCGGCc -3'
miRNA:   3'- -UGUGGUA----------CCCGU---GCGCGCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 48681 0.75 0.228818
Target:  5'- aAUACCcgcGGgGCGCGCGCCggGCGGCg -3'
miRNA:   3'- -UGUGGuacCCgUGCGCGCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 32786 0.74 0.234393
Target:  5'- cGCGgCGUGGGCggGCGcCGCGCCgGCAaGCu -3'
miRNA:   3'- -UGUgGUACCCG--UGC-GCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 112866 0.74 0.263997
Target:  5'- cACGCuCGUGGGCcaaGCGCugGCCaGCAGCu -3'
miRNA:   3'- -UGUG-GUACCCGug-CGCG--CGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 51944 0.74 0.234393
Target:  5'- gGCGCUAcuuUGGGCGCGaCGUGCC-GCAcGCg -3'
miRNA:   3'- -UGUGGU---ACCCGUGC-GCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 18669 0.74 0.254206
Target:  5'- aAC-CCAUGguugccauaucaaacGGCGCGCGCGCCgGCGuGCa -3'
miRNA:   3'- -UGuGGUAC---------------CCGUGCGCGCGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 23933 0.74 0.234393
Target:  5'- gGCgACC-UGGGCaACGUGCGCuCUGCGGg -3'
miRNA:   3'- -UG-UGGuACCCG-UGCGCGCG-GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 43028 0.73 0.289808
Target:  5'- aACGCguUGcGCugGCggaccuGCGCCUGCGGCg -3'
miRNA:   3'- -UGUGguACcCGugCG------CGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 49467 0.73 0.283175
Target:  5'- gGCGCCGUGGuucCGCGCGCGCCcgaguuUGCAc- -3'
miRNA:   3'- -UGUGGUACCc--GUGCGCGCGG------ACGUcg -5'
6734 3' -60.4 NC_001875.2 + 72558 0.73 0.296563
Target:  5'- gGCGCUgcGGGCGCGgGCGCgggcgCUGCGGg -3'
miRNA:   3'- -UGUGGuaCCCGUGCgCGCG-----GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 66204 0.73 0.276662
Target:  5'- cGCGgCGUcGGCGCGCgGUGCCUGCgcGGCg -3'
miRNA:   3'- -UGUgGUAcCCGUGCG-CGCGGACG--UCG- -5'
6734 3' -60.4 NC_001875.2 + 41958 0.73 0.27027
Target:  5'- gGCGCC---GGCGCGCGUGCCgGCGGa -3'
miRNA:   3'- -UGUGGuacCCGUGCGCGCGGaCGUCg -5'
6734 3' -60.4 NC_001875.2 + 79782 0.73 0.283175
Target:  5'- cGCGCCGUGcaaacuGG-ACGCGCGaCUGCGGCu -3'
miRNA:   3'- -UGUGGUAC------CCgUGCGCGCgGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 38930 0.73 0.289808
Target:  5'- gGC-CCAUGcGGUggauGCGgucuUGCGCCUGCAGCu -3'
miRNA:   3'- -UGuGGUAC-CCG----UGC----GCGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 81588 0.73 0.296563
Target:  5'- gACACCGacacGGGCACGCGCaGgCUGCuggaacacgucAGCa -3'
miRNA:   3'- -UGUGGUa---CCCGUGCGCG-CgGACG-----------UCG- -5'
6734 3' -60.4 NC_001875.2 + 40251 0.73 0.296563
Target:  5'- aGCGCCAgccaGuGGCGCGUcaGCGCC-GCGGCc -3'
miRNA:   3'- -UGUGGUa---C-CCGUGCG--CGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 21410 0.73 0.296563
Target:  5'- cGCGCC----GCGCGCGCGCCUGgacCAGCu -3'
miRNA:   3'- -UGUGGuaccCGUGCGCGCGGAC---GUCG- -5'
6734 3' -60.4 NC_001875.2 + 11250 0.73 0.296563
Target:  5'- gGCGCCGagacgGGGCcguguccaggGCGCGCGCCacgccaaacugcUGCAGUu -3'
miRNA:   3'- -UGUGGUa----CCCG----------UGCGCGCGG------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 82651 0.73 0.27027
Target:  5'- uGCAgCGUGGGCG-GCGgGCCgUGguGCa -3'
miRNA:   3'- -UGUgGUACCCGUgCGCgCGG-ACguCG- -5'
6734 3' -60.4 NC_001875.2 + 126289 0.72 0.310438
Target:  5'- uCGCCGUGacuGGCaccuuaACGCGCGCCUcaacgGCGGCc -3'
miRNA:   3'- uGUGGUAC---CCG------UGCGCGCGGA-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.