miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 6796 0.65 0.961218
Target:  5'- gCGCGCGCAAUguuucccgaucgCUGGCACGaguacacCGCgUGCg -3'
miRNA:   3'- -GCGCGUGUUGa-----------GAUUGUGC-------GCG-ACGg -5'
6735 5' -53.5 NC_001875.2 + 6955 0.72 0.721243
Target:  5'- uGCGcCGCGACaUCgccACgGCGCGCUGCUu -3'
miRNA:   3'- gCGC-GUGUUG-AGau-UG-UGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 7089 0.74 0.606658
Target:  5'- uGUGCGCAGacaugC-AGCGCGCGCUGgCCg -3'
miRNA:   3'- gCGCGUGUUga---GaUUGUGCGCGAC-GG- -5'
6735 5' -53.5 NC_001875.2 + 7184 0.7 0.814574
Target:  5'- aGCGCGCGGCcacCUcgcuuacguccagcAACugGCGC-GCCa -3'
miRNA:   3'- gCGCGUGUUGa--GA--------------UUGugCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 7253 0.75 0.544408
Target:  5'- cCGCGCuGCAGCggcCUGGCGCGgGUcGCCg -3'
miRNA:   3'- -GCGCG-UGUUGa--GAUUGUGCgCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 7261 0.73 0.627648
Target:  5'- gGCGguCAAUgUCggcAGCGCGCGCUGCa -3'
miRNA:   3'- gCGCguGUUG-AGa--UUGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 7597 0.66 0.958642
Target:  5'- cCGC-CGCAAUcgCcGGCGCGCaGUUGCCc -3'
miRNA:   3'- -GCGcGUGUUGa-GaUUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 8831 0.72 0.704878
Target:  5'- gCGCGCcCAACaccaacucauucagCUGgcGCACGUGUUGCCg -3'
miRNA:   3'- -GCGCGuGUUGa-------------GAU--UGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 9021 0.74 0.574304
Target:  5'- aGCGCuGCAACUUUGaccggcaACACGUGC-GCCa -3'
miRNA:   3'- gCGCG-UGUUGAGAU-------UGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 9170 0.67 0.914869
Target:  5'- aCGUGCAC-ACUCggauUugGUGC-GCCg -3'
miRNA:   3'- -GCGCGUGuUGAGauu-GugCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 9441 0.7 0.817243
Target:  5'- aGUGCACAugUauaucgggGACGCGCGCgagGaCCu -3'
miRNA:   3'- gCGCGUGUugAga------UUGUGCGCGa--C-GG- -5'
6735 5' -53.5 NC_001875.2 + 9838 0.73 0.627648
Target:  5'- aCGCGCACAAUUUUuucGACAgcgcCGCGCaGCUg -3'
miRNA:   3'- -GCGCGUGUUGAGA---UUGU----GCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 9895 0.66 0.958642
Target:  5'- uCGCGUACAACgacagucgCcGGCugGCGUUcaugacagaccgGCCa -3'
miRNA:   3'- -GCGCGUGUUGa-------GaUUGugCGCGA------------CGG- -5'
6735 5' -53.5 NC_001875.2 + 9923 0.76 0.484372
Target:  5'- gGCGCGCGggccgcaaguAUUCUAGCG-GUGCUGCCc -3'
miRNA:   3'- gCGCGUGU----------UGAGAUUGUgCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 9980 0.67 0.936813
Target:  5'- gCGUGUACAGggCguacguGCACGCGCuugugaaaaacUGCCa -3'
miRNA:   3'- -GCGCGUGUUgaGau----UGUGCGCG-----------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 10441 0.78 0.383577
Target:  5'- gGCGCAgCAGCUUUGACGCGgCGCgGCg -3'
miRNA:   3'- gCGCGU-GUUGAGAUUGUGC-GCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 10649 0.67 0.933778
Target:  5'- cCGCGCcaGCAGCUCgaacucguucagcaAGCgccauucacugaGCGCGCcGCCg -3'
miRNA:   3'- -GCGCG--UGUUGAGa-------------UUG------------UGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 10666 0.72 0.680031
Target:  5'- gGCGgACugcACUUggcGCAgGCGCUGCCg -3'
miRNA:   3'- gCGCgUGu--UGAGau-UGUgCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 10735 0.66 0.958642
Target:  5'- aGCaGCAgCAGCUgcacgUUGuCGCGCaGCUGCCu -3'
miRNA:   3'- gCG-CGU-GUUGA-----GAUuGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 11056 0.69 0.838
Target:  5'- aCGCGCGCAaacugcagcaguuugGCg-UGGCGCGCGCccuggacacgGCCg -3'
miRNA:   3'- -GCGCGUGU---------------UGagAUUGUGCGCGa---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.