miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 126478 0.69 0.841352
Target:  5'- aCGCGCGCAguuuacgccggccGCcgUUGAgGCGCGCguuaaggUGCCa -3'
miRNA:   3'- -GCGCGUGU-------------UGa-GAUUgUGCGCG-------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 126092 0.68 0.908755
Target:  5'- aCGUGUACAACgcgcUUAAC-CGCGgaGUCg -3'
miRNA:   3'- -GCGCGUGUUGa---GAUUGuGCGCgaCGG- -5'
6735 5' -53.5 NC_001875.2 + 124942 0.71 0.777585
Target:  5'- aGCGCACGuuggucucgggaaaGCUCUguuuGAC-CGCGUcGCCg -3'
miRNA:   3'- gCGCGUGU--------------UGAGA----UUGuGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 124896 0.7 0.807381
Target:  5'- aCGUGCGCGGCUCgGACGgcggcgaaacggcCGaCGCgUGCCu -3'
miRNA:   3'- -GCGCGUGUUGAGaUUGU-------------GC-GCG-ACGG- -5'
6735 5' -53.5 NC_001875.2 + 124820 0.7 0.799161
Target:  5'- gGCGCuaaAGgUCaGAUACGCGCcGCCg -3'
miRNA:   3'- gCGCGug-UUgAGaUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 124706 0.66 0.954762
Target:  5'- aCGUGCggugaaGCAACa--GGCACGCGUcgGCCg -3'
miRNA:   3'- -GCGCG------UGUUGagaUUGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 124679 0.67 0.931704
Target:  5'- aCGUGUuCAugUUUGGguCGCGCUGgCa -3'
miRNA:   3'- -GCGCGuGUugAGAUUguGCGCGACgG- -5'
6735 5' -53.5 NC_001875.2 + 122757 0.67 0.926344
Target:  5'- aGCGC-CGACUCgccACAgGCGCaGUUg -3'
miRNA:   3'- gCGCGuGUUGAGau-UGUgCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 122390 0.66 0.940719
Target:  5'- gCGCGUGCAACgacgcguuugugCUAagcugcguGCGCGCGCcgUGCg -3'
miRNA:   3'- -GCGCGUGUUGa-----------GAU--------UGUGCGCG--ACGg -5'
6735 5' -53.5 NC_001875.2 + 122220 0.69 0.851214
Target:  5'- gCGCGCACGcaGCUUagcacaAACGCGuCGUUGCa -3'
miRNA:   3'- -GCGCGUGU--UGAGa-----UUGUGC-GCGACGg -5'
6735 5' -53.5 NC_001875.2 + 122129 0.68 0.908755
Target:  5'- aCGUGCccgcCAGCUUUuugAAUACGCugcaacGCUGCCg -3'
miRNA:   3'- -GCGCGu---GUUGAGA---UUGUGCG------CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 122118 0.66 0.950642
Target:  5'- aCGUGC-CAcGCUUcgGGCGCgGCGCgGCCg -3'
miRNA:   3'- -GCGCGuGU-UGAGa-UUGUG-CGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 121475 0.66 0.94167
Target:  5'- gCGgGCACAugUag--UACGCGUUGCa -3'
miRNA:   3'- -GCgCGUGUugAgauuGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 120824 0.68 0.895786
Target:  5'- gGCGCACAGCa-----GCGCGCcGUCg -3'
miRNA:   3'- gCGCGUGUUGagauugUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 120452 0.66 0.943544
Target:  5'- gGUGCGCAcCUUguuGCAucgcacgcgcuucauCGCGCUGCg -3'
miRNA:   3'- gCGCGUGUuGAGau-UGU---------------GCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 118440 0.66 0.958642
Target:  5'- uGC-CAguACUCgcugugcuACGCGUGCUGCg -3'
miRNA:   3'- gCGcGUguUGAGau------UGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 117921 0.72 0.690421
Target:  5'- cCGCGguCAucACUUauauuagauguUGACgaACGCGCUGCCa -3'
miRNA:   3'- -GCGCguGU--UGAG-----------AUUG--UGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 116930 0.7 0.808286
Target:  5'- cCG-GCAuCAACUCauuGCACGCGCagcGCCu -3'
miRNA:   3'- -GCgCGU-GUUGAGau-UGUGCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 116928 0.67 0.914869
Target:  5'- gGCGCACAAUgacguagagcaUCcacacGCGCGUGUUGUCu -3'
miRNA:   3'- gCGCGUGUUG-----------AGau---UGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 115463 0.73 0.6696
Target:  5'- cCGCGUugAGCU--AGCGgGCGCgGCCa -3'
miRNA:   3'- -GCGCGugUUGAgaUUGUgCGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.