miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 70968 0.67 0.960461
Target:  5'- -aAUUggACGGCCGGGCcguccacGAGCCU-GGa -3'
miRNA:   3'- cgUGAaaUGCCGGUCCG-------UUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 121458 0.68 0.938086
Target:  5'- gGCGCggcggcguucaaagUUUuCGGCCAGGCcguAGCC-CGGc -3'
miRNA:   3'- -CGUG--------------AAAuGCCGGUCCGu--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 119329 0.66 0.980971
Target:  5'- cGCACU--GCGccCCAGGCGcuuuguaaauaAGCCUCGu -3'
miRNA:   3'- -CGUGAaaUGCc-GGUCCGU-----------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 65768 0.67 0.97074
Target:  5'- aGC-Cg--GCGGCUGGGCGAGCaCgcgcgCGGc -3'
miRNA:   3'- -CGuGaaaUGCCGGUCCGUUUG-Ga----GCC- -5'
6736 3' -51.8 NC_001875.2 + 97124 0.68 0.958597
Target:  5'- uGCACgcugccaaacuCGGCUAuGGCGAACCcgUUGGg -3'
miRNA:   3'- -CGUGaaau-------GCCGGU-CCGUUUGG--AGCC- -5'
6736 3' -51.8 NC_001875.2 + 31557 0.69 0.934559
Target:  5'- cGCGCUgcaggUugGGCCcGGCGGcuuCCUUGc -3'
miRNA:   3'- -CGUGAa----AugCCGGuCCGUUu--GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 53532 0.67 0.97074
Target:  5'- cGCACgucgUGCGcuaCCAGcGCGAGCCgcaaaCGGg -3'
miRNA:   3'- -CGUGaa--AUGCc--GGUC-CGUUUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 19942 0.69 0.934044
Target:  5'- aCACggaGCGGCCGGcGCGAcgguccggccggcGCCUCGc -3'
miRNA:   3'- cGUGaaaUGCCGGUC-CGUU-------------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 113889 0.69 0.918026
Target:  5'- cGCGCUggcUGGCCGGGCAcAAaaaCUCGu -3'
miRNA:   3'- -CGUGAaauGCCGGUCCGU-UUg--GAGCc -5'
6736 3' -51.8 NC_001875.2 + 54594 0.68 0.948806
Target:  5'- cGCuGCUUUGCgcgaGGCUGGGCGAAgaUUCGGu -3'
miRNA:   3'- -CG-UGAAAUG----CCGGUCCGUUUg-GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 63130 0.67 0.967661
Target:  5'- ------aGCGGCCGGGCGcgcGGCCggcgcaCGGg -3'
miRNA:   3'- cgugaaaUGCCGGUCCGU---UUGGa-----GCC- -5'
6736 3' -51.8 NC_001875.2 + 91187 0.68 0.953056
Target:  5'- gGCGCUUgcguguuguUGGUCGGGUccGCCUCGu -3'
miRNA:   3'- -CGUGAAau-------GCCGGUCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 3101 0.68 0.953056
Target:  5'- cGCGCcggggcGCGGCUcgcGGcGCAGACCUgGGc -3'
miRNA:   3'- -CGUGaaa---UGCCGG---UC-CGUUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 94636 0.68 0.944309
Target:  5'- uGCACcgcUGC-GCCAGGCuuuCCUCGa -3'
miRNA:   3'- -CGUGaa-AUGcCGGUCCGuuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 41132 0.68 0.93956
Target:  5'- cGCGCUUgaccgGCGGCCGcgccGGCAAcCCcaUCGu -3'
miRNA:   3'- -CGUGAAa----UGCCGGU----CCGUUuGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 115683 0.66 0.984947
Target:  5'- uGCACacgUugGG-CAGGCAuuCCagGGg -3'
miRNA:   3'- -CGUGaa-AugCCgGUCCGUuuGGagCC- -5'
6736 3' -51.8 NC_001875.2 + 94677 0.66 0.983047
Target:  5'- aGCGC---GCGGCaCGGGUgcugGAACC-CGGc -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCG----UUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 29199 0.67 0.973603
Target:  5'- gGCaACUUUggccaguugaugGCGGCCAagcuGGCAAACC-CGc -3'
miRNA:   3'- -CG-UGAAA------------UGCCGGU----CCGUUUGGaGCc -5'
6736 3' -51.8 NC_001875.2 + 112839 0.67 0.97074
Target:  5'- aGCGCgUUGCGGCCuGcGCGcacuGCCgUGGa -3'
miRNA:   3'- -CGUGaAAUGCCGGuC-CGUu---UGGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.