miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 26092 0.66 0.976434
Target:  5'- aGUGUGAAGUGgGCGAgGAGcuCAUCGa -3'
miRNA:   3'- -CGCGCUUCGCaUGCUgCUCacGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 21492 0.68 0.930001
Target:  5'- gGCGUcGGGCG-ACGcCGAGUGCAg-- -3'
miRNA:   3'- -CGCGcUUCGCaUGCuGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 58768 0.7 0.879425
Target:  5'- cGCGCGuGGCcaACGACGAcGUGCGc-- -3'
miRNA:   3'- -CGCGCuUCGcaUGCUGCU-CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 56718 0.68 0.944838
Target:  5'- cGCGCGAAaCGUACG-CG-GUGCcgugggacuGUCAg -3'
miRNA:   3'- -CGCGCUUcGCAUGCuGCuCACG---------UAGU- -5'
6737 3' -52.5 NC_001875.2 + 3325 0.66 0.976434
Target:  5'- gGCGCGAuaAGCGg--GACGGGcGCcUCGu -3'
miRNA:   3'- -CGCGCU--UCGCaugCUGCUCaCGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 113557 0.66 0.973808
Target:  5'- cGCGCGAAGCGgccuugUGCGACcgc-GUGUCGa -3'
miRNA:   3'- -CGCGCUUCGC------AUGCUGcucaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 66947 0.7 0.878694
Target:  5'- gGCGCGAcagcugAGCGU-CGACGAccuuaacGUGCucAUCAa -3'
miRNA:   3'- -CGCGCU------UCGCAuGCUGCU-------CACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 54358 0.7 0.872015
Target:  5'- cGCGCccGgcGCGUugGGCGAGcGCAc-- -3'
miRNA:   3'- -CGCG--CuuCGCAugCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 66110 0.68 0.935198
Target:  5'- cCGCGcGGCGgGCGGCGAGgcgGCGc-- -3'
miRNA:   3'- cGCGCuUCGCaUGCUGCUCa--CGUagu -5'
6737 3' -52.5 NC_001875.2 + 39168 0.7 0.879425
Target:  5'- cCGCGAGGCGggcCGGCGGuUGCGUg- -3'
miRNA:   3'- cGCGCUUCGCau-GCUGCUcACGUAgu -5'
6737 3' -52.5 NC_001875.2 + 128741 0.66 0.976434
Target:  5'- cGCGCGAGccGCGcccCGGCGcGUGCAc-- -3'
miRNA:   3'- -CGCGCUU--CGCau-GCUGCuCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 42187 0.67 0.953487
Target:  5'- cGCGCGGuugGGCGUuucaaauagcgcGCGGCGgcacgcguGGUGCuuGUCAa -3'
miRNA:   3'- -CGCGCU---UCGCA------------UGCUGC--------UCACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 96987 0.67 0.949285
Target:  5'- cGUGCGcaaguuGCGuUGCGACGGGUGUg--- -3'
miRNA:   3'- -CGCGCuu----CGC-AUGCUGCUCACGuagu -5'
6737 3' -52.5 NC_001875.2 + 39656 0.68 0.944838
Target:  5'- cGCGCGAguuugggccggcGGCGcgcgGCGGCGAGcUGCu--- -3'
miRNA:   3'- -CGCGCU------------UCGCa---UGCUGCUC-ACGuagu -5'
6737 3' -52.5 NC_001875.2 + 11138 0.66 0.96793
Target:  5'- uCGCGAAGUGauugcCGACGGGgagGCGUa- -3'
miRNA:   3'- cGCGCUUCGCau---GCUGCUCa--CGUAgu -5'
6737 3' -52.5 NC_001875.2 + 109958 0.66 0.970975
Target:  5'- aGCGCGAcGUGUACGACaAGUaCAa-- -3'
miRNA:   3'- -CGCGCUuCGCAUGCUGcUCAcGUagu -5'
6737 3' -52.5 NC_001875.2 + 74601 0.66 0.973808
Target:  5'- aCGCaGAuGUGgcCGugGAGUGCcUCAa -3'
miRNA:   3'- cGCG-CUuCGCauGCugCUCACGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 68894 0.66 0.973808
Target:  5'- aCGCc--GCGUcCGGCGAGUGUcgaGUCAa -3'
miRNA:   3'- cGCGcuuCGCAuGCUGCUCACG---UAGU- -5'
6737 3' -52.5 NC_001875.2 + 19355 0.66 0.976434
Target:  5'- uGCGCGGAGCGUugGcCGAc-GUAa-- -3'
miRNA:   3'- -CGCGCUUCGCAugCuGCUcaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 75600 0.66 0.976434
Target:  5'- -gGCGAuGGCGU-CGGCGuugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCucaCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.