miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 111143 0.76 0.311404
Target:  5'- --uACGUUGGCGGCgGCuuggugUCACGGCGCUg -3'
miRNA:   3'- aauUGUAGCCGCCG-CG------AGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 110170 0.66 0.839162
Target:  5'- ---uCGUCGGgCGGCGUcgCACuGCGCUc -3'
miRNA:   3'- aauuGUAGCC-GCCGCGa-GUGcUGCGA- -5'
6741 5' -56 NC_001875.2 + 110000 0.7 0.634724
Target:  5'- ----gGUCGGUGGCGUUgACGcGCGCg -3'
miRNA:   3'- aauugUAGCCGCCGCGAgUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 109126 0.75 0.373848
Target:  5'- -cGGCGaCGGCGGCGgUCuugGCGACGCa -3'
miRNA:   3'- aaUUGUaGCCGCCGCgAG---UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 108861 0.66 0.87826
Target:  5'- -aGAUcUUGGCGGCGCUggaaacCACcaaaGACGCa -3'
miRNA:   3'- aaUUGuAGCCGCCGCGA------GUG----CUGCGa -5'
6741 5' -56 NC_001875.2 + 108569 0.74 0.408103
Target:  5'- -cGGCG-CGGCGGUGCUgGCGcuGCGCUg -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAgUGC--UGCGA- -5'
6741 5' -56 NC_001875.2 + 105587 0.67 0.822104
Target:  5'- --uACAUCuuGGCGGUGgaCACGcCGCa -3'
miRNA:   3'- aauUGUAG--CCGCCGCgaGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 102856 0.68 0.776471
Target:  5'- aUGACugaGGCGuGUGUgguUCGCGACGCg -3'
miRNA:   3'- aAUUGuagCCGC-CGCG---AGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 102254 0.68 0.776471
Target:  5'- -aAGCcgCgGGUGaGCGCUCGCG-CGCg -3'
miRNA:   3'- aaUUGuaG-CCGC-CGCGAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 101962 0.74 0.416969
Target:  5'- -aGGCGcCGGUGGCGaaCGCGACGCa -3'
miRNA:   3'- aaUUGUaGCCGCCGCgaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 101079 0.66 0.847401
Target:  5'- uUUGGCGUgGGCGGaGCUauacaGCGACaGCg -3'
miRNA:   3'- -AAUUGUAgCCGCCgCGAg----UGCUG-CGa -5'
6741 5' -56 NC_001875.2 + 100142 0.69 0.717394
Target:  5'- --uGCGcCGGCGGCGCgcaaGCGGCGg- -3'
miRNA:   3'- aauUGUaGCCGCCGCGag--UGCUGCga -5'
6741 5' -56 NC_001875.2 + 99713 0.66 0.855437
Target:  5'- -gAGCGcUauGCGGCGCUCGCaaguGCGCg -3'
miRNA:   3'- aaUUGU-AgcCGCCGCGAGUGc---UGCGa -5'
6741 5' -56 NC_001875.2 + 99392 0.7 0.654541
Target:  5'- --cGCAcCGGCGGCGCcagcgggUCGCGcaGCGCa -3'
miRNA:   3'- aauUGUaGCCGCCGCG-------AGUGC--UGCGa -5'
6741 5' -56 NC_001875.2 + 98917 0.71 0.603441
Target:  5'- gUAGCucgCGGCGccgguuGCGCgugCGCGACGCg -3'
miRNA:   3'- aAUUGua-GCCGC------CGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 98894 0.66 0.855437
Target:  5'- -cGACAUggCGaGCGGCGCgCAaacUGACGCg -3'
miRNA:   3'- aaUUGUA--GC-CGCCGCGaGU---GCUGCGa -5'
6741 5' -56 NC_001875.2 + 98351 0.66 0.87826
Target:  5'- ----aAUCGGuUGGCGCaccccagcgCGCGGCGCg -3'
miRNA:   3'- aauugUAGCC-GCCGCGa--------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 96439 0.7 0.634724
Target:  5'- ----uGUCGGCGuCGCUCGCG-CGCg -3'
miRNA:   3'- aauugUAGCCGCcGCGAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 95228 0.69 0.717394
Target:  5'- --cGCgAUCGGUGGUGCaaggGCGACGCg -3'
miRNA:   3'- aauUG-UAGCCGCCGCGag--UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 94473 0.68 0.776471
Target:  5'- --uGCAgCGGCGcGCGCguucgCACGAgCGCg -3'
miRNA:   3'- aauUGUaGCCGC-CGCGa----GUGCU-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.