Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6743 | 3' | -62.9 | NC_001875.2 | + | 110150 | 0.7 | 0.360007 |
Target: 5'- aCCGcaGCACCGCguCGCGcucgucgGGCGGCGUCg -3' miRNA: 3'- cGGC--CGUGGCG--GUGUca-----CCGCCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 21899 | 0.7 | 0.360007 |
Target: 5'- cGUCGcGCugCuCCGCGGUGaGCGGCG-Cg -3' miRNA: 3'- -CGGC-CGugGcGGUGUCAC-CGCCGCaG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 42907 | 0.69 | 0.366179 |
Target: 5'- gGCUGuGCGCCGCaugccgugggcguCGCAgucaaacGUGGCGuGCGUCa -3' miRNA: 3'- -CGGC-CGUGGCG-------------GUGU-------CACCGC-CGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 11806 | 0.69 | 0.370856 |
Target: 5'- uGCCGGcCGCgucgguguuugugguCGCgC-CGGUGGCGGgGUCg -3' miRNA: 3'- -CGGCC-GUG---------------GCG-GuGUCACCGCCgCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 81351 | 0.69 | 0.375573 |
Target: 5'- cGCUGGUGCCGCgCGCAcgcgccGGCcGCGUCg -3' miRNA: 3'- -CGGCCGUGGCG-GUGUca----CCGcCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 11319 | 0.69 | 0.375573 |
Target: 5'- gGCCuGCacgACCGCCACGauuUGGCGaGUGUCu -3' miRNA: 3'- -CGGcCG---UGGCGGUGUc--ACCGC-CGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 12298 | 0.69 | 0.375573 |
Target: 5'- aGCCGGCA-CGCCGCcGUGuGCGuG-GUCa -3' miRNA: 3'- -CGGCCGUgGCGGUGuCAC-CGC-CgCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 81469 | 0.69 | 0.391588 |
Target: 5'- cGCUGGU-CCGCgGuCAGUGGCGcGCG-Cg -3' miRNA: 3'- -CGGCCGuGGCGgU-GUCACCGC-CGCaG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 85839 | 0.69 | 0.39976 |
Target: 5'- cGUCGuGCACCGCguUguuGUGGUGcGCGUCc -3' miRNA: 3'- -CGGC-CGUGGCGguGu--CACCGC-CGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 44903 | 0.69 | 0.408041 |
Target: 5'- cGCUGGCGCuCGCCcucGCAcucuaGGCGGCGcuUCa -3' miRNA: 3'- -CGGCCGUG-GCGG---UGUca---CCGCCGC--AG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 47601 | 0.68 | 0.416428 |
Target: 5'- cGCCGGCgcgcguuuGCCGCUcaACAGUGGCguaccuaugaaGGCa-- -3' miRNA: 3'- -CGGCCG--------UGGCGG--UGUCACCG-----------CCGcag -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 97871 | 0.68 | 0.416428 |
Target: 5'- uGCCGGUcggcuGCgCGCCGCAcgGGCacguugcgGGCGUCg -3' miRNA: 3'- -CGGCCG-----UG-GCGGUGUcaCCG--------CCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 103966 | 0.68 | 0.424065 |
Target: 5'- -aCGGCAuucgaguCUGCCAUGGaaaugGGCGGCGUg -3' miRNA: 3'- cgGCCGU-------GGCGGUGUCa----CCGCCGCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 41459 | 0.68 | 0.424919 |
Target: 5'- cGCCGGUugCGgCGCGc--GCGGCGUg -3' miRNA: 3'- -CGGCCGugGCgGUGUcacCGCCGCAg -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 76377 | 0.68 | 0.424919 |
Target: 5'- gGCUGGCACgauCGCagauuCAGUucGGCGGUGUUg -3' miRNA: 3'- -CGGCCGUG---GCGgu---GUCA--CCGCCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 3132 | 0.68 | 0.424919 |
Target: 5'- gGgCGGCGaagcCCGCUgcGCGGacGCGGCGUCg -3' miRNA: 3'- -CgGCCGU----GGCGG--UGUCacCGCCGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 91204 | 0.68 | 0.430924 |
Target: 5'- gGUCGGguCCGCCucguaguaggcgagGCGcGUGGUGGCGcCc -3' miRNA: 3'- -CGGCCguGGCGG--------------UGU-CACCGCCGCaG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 13748 | 0.68 | 0.433513 |
Target: 5'- cGCgCGGCGUCGCgCACaaAGUGGUGGCagcaGUCu -3' miRNA: 3'- -CG-GCCGUGGCG-GUG--UCACCGCCG----CAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 37112 | 0.68 | 0.433513 |
Target: 5'- uGCgGGCGCggCGCCGCGccGGCGuuuGCGUCu -3' miRNA: 3'- -CGgCCGUG--GCGGUGUcaCCGC---CGCAG- -5' |
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6743 | 3' | -62.9 | NC_001875.2 | + | 42741 | 0.68 | 0.433513 |
Target: 5'- cGCgCGGCGaCGCgCAUGGUGaGCGGCG-Cg -3' miRNA: 3'- -CG-GCCGUgGCG-GUGUCAC-CGCCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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