miRNA display CGI


Results 41 - 60 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 3' -52.7 NC_001875.2 + 83399 0.71 0.782772
Target:  5'- ----cGCGgguugGUCGCc-AUGGCGCCGCa -3'
miRNA:   3'- auuuuUGCa----CAGCGacUGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 54932 0.71 0.782772
Target:  5'- -----uCGUcGUCGCUG--GGCGCCGCc -3'
miRNA:   3'- auuuuuGCA-CAGCGACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 31522 0.71 0.800625
Target:  5'- cGAAGGCGgcggGUCGUUGaACGGCaccacuugcacgcGCUGCa -3'
miRNA:   3'- aUUUUUGCa---CAGCGAC-UGCCG-------------CGGCG- -5'
6745 3' -52.7 NC_001875.2 + 125043 0.71 0.801549
Target:  5'- aUAGAGACaUGUUGCUGuuGGCGaaGCu -3'
miRNA:   3'- -AUUUUUGcACAGCGACugCCGCggCG- -5'
6745 3' -52.7 NC_001875.2 + 8498 0.71 0.810696
Target:  5'- --cGGGCGccGUCcgUGugGGCGCCGCg -3'
miRNA:   3'- auuUUUGCa-CAGcgACugCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 77388 0.71 0.810696
Target:  5'- ----------aCGCUGuGCGGCGCCGCg -3'
miRNA:   3'- auuuuugcacaGCGAC-UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65582 0.7 0.819671
Target:  5'- gAAGAGCuUGUCccaGUUGGCGGCGCaguGCg -3'
miRNA:   3'- aUUUUUGcACAG---CGACUGCCGCGg--CG- -5'
6745 3' -52.7 NC_001875.2 + 79119 0.7 0.819671
Target:  5'- ---cGGCGuUGUCgGC-GGCgGGCGCCGCg -3'
miRNA:   3'- auuuUUGC-ACAG-CGaCUG-CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5122 0.7 0.828463
Target:  5'- cGGAAAgGUcacGUcCGCgGACGuGCGCCGCu -3'
miRNA:   3'- aUUUUUgCA---CA-GCGaCUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 91159 0.7 0.828463
Target:  5'- gAuuGACG-GUCGCgcaauugGACGGaauguCGCCGCg -3'
miRNA:   3'- aUuuUUGCaCAGCGa------CUGCC-----GCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 44428 0.7 0.833647
Target:  5'- -uGGGGCG-GUCGUUGAacgcgaucagcaaGGCGCCGUc -3'
miRNA:   3'- auUUUUGCaCAGCGACUg------------CCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 110646 0.7 0.837064
Target:  5'- ------gGUGgCGCUGGCcGUGCCGCg -3'
miRNA:   3'- auuuuugCACaGCGACUGcCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 5720 0.7 0.837064
Target:  5'- cUAAGAACcgaacaaaGUgGUCGUUGAUGGCGaCGCg -3'
miRNA:   3'- -AUUUUUG--------CA-CAGCGACUGCCGCgGCG- -5'
6745 3' -52.7 NC_001875.2 + 114234 0.7 0.837064
Target:  5'- -----uCGUcGUCGCUgGACGcGgGCCGCa -3'
miRNA:   3'- auuuuuGCA-CAGCGA-CUGC-CgCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 88231 0.7 0.837064
Target:  5'- cAAAAACGg--CGCaagcGGCGcGCGCCGCc -3'
miRNA:   3'- aUUUUUGCacaGCGa---CUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 50211 0.7 0.837064
Target:  5'- cGAGAACGUGUCaacaaacaGCcguuUGgcGCGGCGCgGCa -3'
miRNA:   3'- aUUUUUGCACAG--------CG----AC--UGCCGCGgCG- -5'
6745 3' -52.7 NC_001875.2 + 91228 0.7 0.837064
Target:  5'- gAGGcGCGUGguggCGCccaccACGGCGCCGUa -3'
miRNA:   3'- aUUUuUGCACa---GCGac---UGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 18752 0.7 0.837064
Target:  5'- ---cGGCGgcuaaggCGCUGACGcGCGUCGCc -3'
miRNA:   3'- auuuUUGCaca----GCGACUGC-CGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 86089 0.7 0.845466
Target:  5'- ------gGUGUCGggcuCGGCGCCGCg -3'
miRNA:   3'- auuuuugCACAGCgacuGCCGCGGCG- -5'
6745 3' -52.7 NC_001875.2 + 65714 0.7 0.845466
Target:  5'- ----cAC-UGUucCGCgGGCGGCGCCGCc -3'
miRNA:   3'- auuuuUGcACA--GCGaCUGCCGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.