miRNA display CGI


Results 41 - 60 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 36198 0.66 0.828177
Target:  5'- uUGuCGUCGUccaCGCAaauUAGCAGCACGuGCg -3'
miRNA:   3'- cGC-GCAGCGc--GCGU---GUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 51956 0.66 0.828177
Target:  5'- gGCGCGaCGUGcCGCAC-GC-GCGCGcGUg -3'
miRNA:   3'- -CGCGCaGCGC-GCGUGuCGuUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 77044 0.66 0.828177
Target:  5'- cCGCGUCGCgGUGCuAguGCcGCcCGGUu -3'
miRNA:   3'- cGCGCAGCG-CGCG-UguCGuUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 121893 0.66 0.828177
Target:  5'- aCGCuGUCGuCGaCGCGCAGau-CGgGGCa -3'
miRNA:   3'- cGCG-CAGC-GC-GCGUGUCguuGUgCCG- -5'
6745 5' -57.7 NC_001875.2 + 96034 0.66 0.825663
Target:  5'- uGUGCGUgGCGCGCgaguuuaacuguuuGCGcGCcauCACGGg -3'
miRNA:   3'- -CGCGCAgCGCGCG--------------UGU-CGuu-GUGCCg -5'
6745 5' -57.7 NC_001875.2 + 118300 0.66 0.819737
Target:  5'- uGCaGC-UgGCGCGCuu-GCAACaACGGCu -3'
miRNA:   3'- -CG-CGcAgCGCGCGuguCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 88889 0.66 0.819737
Target:  5'- gGCGCGcUGCGCGgGCuGCugacGCACGcCa -3'
miRNA:   3'- -CGCGCaGCGCGCgUGuCGu---UGUGCcG- -5'
6745 5' -57.7 NC_001875.2 + 81722 0.66 0.819737
Target:  5'- aGCGCuaCGUGCGCgucaacgaccuGCAGUGGauucCGCGGCg -3'
miRNA:   3'- -CGCGcaGCGCGCG-----------UGUCGUU----GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 32972 0.66 0.819737
Target:  5'- cCGUGUuuaCGaCGCGCACGGUGuugcgcuCGCGGUc -3'
miRNA:   3'- cGCGCA---GC-GCGCGUGUCGUu------GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 52649 0.66 0.819737
Target:  5'- uGUGCG--GCGCGgACAuuuaccaCAACACGGCc -3'
miRNA:   3'- -CGCGCagCGCGCgUGUc------GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 39085 0.66 0.819737
Target:  5'- cGCgGCGUCGUGCuGUgccaacgcuGCAGUuccgcgcuccAugGCGGCg -3'
miRNA:   3'- -CG-CGCAGCGCG-CG---------UGUCG----------UugUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 7392 0.66 0.819737
Target:  5'- cGCG-GUUGCGCGaCGCGGUcgcaaaacauAUugGGCc -3'
miRNA:   3'- -CGCgCAGCGCGC-GUGUCGu---------UGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 110868 0.66 0.819737
Target:  5'- uUGCGcUGCGgGCAUuGCGACGCGuuuGCg -3'
miRNA:   3'- cGCGCaGCGCgCGUGuCGUUGUGC---CG- -5'
6745 5' -57.7 NC_001875.2 + 60276 0.66 0.819737
Target:  5'- uUGCuUUGCgGCGCACuuguuGGCGACACuGCa -3'
miRNA:   3'- cGCGcAGCG-CGCGUG-----UCGUUGUGcCG- -5'
6745 5' -57.7 NC_001875.2 + 77368 0.66 0.819737
Target:  5'- aGCGCGaaguccUGC-CGCACAcGCugUGCGGCg -3'
miRNA:   3'- -CGCGCa-----GCGcGCGUGU-CGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 5513 0.66 0.819737
Target:  5'- -gGCG-CaCGCGCGCAGUuuACGcCGGCc -3'
miRNA:   3'- cgCGCaGcGCGCGUGUCGu-UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 108941 0.66 0.819737
Target:  5'- -gGCGUUGCGCa-GCAG-GAUGCGGCc -3'
miRNA:   3'- cgCGCAGCGCGcgUGUCgUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 74451 0.66 0.819737
Target:  5'- aCGCcaaUCGCGUGCACAuGCAgACGCccgugauugaaGGCa -3'
miRNA:   3'- cGCGc--AGCGCGCGUGU-CGU-UGUG-----------CCG- -5'
6745 5' -57.7 NC_001875.2 + 114200 0.66 0.819737
Target:  5'- cGCGCGaUUGCGCaaGUugGGCggUACGu- -3'
miRNA:   3'- -CGCGC-AGCGCG--CGugUCGuuGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 48231 0.66 0.818884
Target:  5'- aGCGCGUCaauugcuGCaaGUugAGCuACGgCGGCg -3'
miRNA:   3'- -CGCGCAG-------CGcgCGugUCGuUGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.