miRNA display CGI


Results 21 - 40 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 75618 0.66 0.83644
Target:  5'- -gGCGUCgGCGUugGCGuCGGCGuugGCGuCGGCg -3'
miRNA:   3'- cgCGCAG-CGCG--CGU-GUCGU---UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 66809 0.66 0.83644
Target:  5'- uGCGCGUacgccggcaGCGaGUugAGCAcaaACgACGGCu -3'
miRNA:   3'- -CGCGCAg--------CGCgCGugUCGU---UG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 127414 0.66 0.83644
Target:  5'- -gGCGgCGCGCGU-CAGCAugccgccguGCAUGaGCa -3'
miRNA:   3'- cgCGCaGCGCGCGuGUCGU---------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 59575 0.66 0.83644
Target:  5'- aUGUGUUGCGC-UGCAGCGuggccgacguGCGCGaGCa -3'
miRNA:   3'- cGCGCAGCGCGcGUGUCGU----------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 79915 0.66 0.83644
Target:  5'- -aGCGcCGCaCGCuguGCAGCGgCGGCa -3'
miRNA:   3'- cgCGCaGCGcGCGuguCGUUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 41120 0.66 0.83644
Target:  5'- -gGCGUCGUGUGC-CAGC---GCGuGCc -3'
miRNA:   3'- cgCGCAGCGCGCGuGUCGuugUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 70204 0.66 0.835622
Target:  5'- gGCGUGUCGCGgGCcacguuagcgauCAGUucucgccaagccagcGCGCGGUg -3'
miRNA:   3'- -CGCGCAGCGCgCGu-----------GUCGu--------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 58698 0.66 0.835622
Target:  5'- -aGCGUUguggagaGCGUGUACAGCGcgACGcGCa -3'
miRNA:   3'- cgCGCAG-------CGCGCGUGUCGUugUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 105069 0.66 0.835622
Target:  5'- gGCGCGUCGCucaacgaGUGCuACGGCGAagagUACGa- -3'
miRNA:   3'- -CGCGCAGCG-------CGCG-UGUCGUU----GUGCcg -5'
6745 5' -57.7 NC_001875.2 + 122696 0.66 0.835622
Target:  5'- cGUGCGcCGUggacaccgaacugGCGCGCgAGUc-CACGGCg -3'
miRNA:   3'- -CGCGCaGCG-------------CGCGUG-UCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 33561 0.66 0.831503
Target:  5'- aGUGCgGUCGcCGCGgGgcaccaugcccgaguCGGCGACGUGGCg -3'
miRNA:   3'- -CGCG-CAGC-GCGCgU---------------GUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 14932 0.66 0.828177
Target:  5'- uGCGCcaccCGcCGCGCGCGGCuAGCGCa-- -3'
miRNA:   3'- -CGCGca--GC-GCGCGUGUCG-UUGUGccg -5'
6745 5' -57.7 NC_001875.2 + 39023 0.66 0.828177
Target:  5'- -aGU-UUGCGCGCACcuCGGCAuCGGCg -3'
miRNA:   3'- cgCGcAGCGCGCGUGucGUUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 22665 0.66 0.828177
Target:  5'- cGCGCGuUCGC-UGCACAaacucaaaacGCAucauGCAuCGGCu -3'
miRNA:   3'- -CGCGC-AGCGcGCGUGU----------CGU----UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 51956 0.66 0.828177
Target:  5'- gGCGCGaCGUGcCGCAC-GC-GCGCGcGUg -3'
miRNA:   3'- -CGCGCaGCGC-GCGUGuCGuUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 42306 0.66 0.828177
Target:  5'- gGCGCcaaGUacagaucgaGCGCGCcCAGCGGCcccaGGCg -3'
miRNA:   3'- -CGCG---CAg--------CGCGCGuGUCGUUGug--CCG- -5'
6745 5' -57.7 NC_001875.2 + 77044 0.66 0.828177
Target:  5'- cCGCGUCGCgGUGCuAguGCcGCcCGGUu -3'
miRNA:   3'- cGCGCAGCG-CGCG-UguCGuUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 36198 0.66 0.828177
Target:  5'- uUGuCGUCGUccaCGCAaauUAGCAGCACGuGCg -3'
miRNA:   3'- cGC-GCAGCGc--GCGU---GUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 9898 0.66 0.828177
Target:  5'- aCGCuGcCGCGCGCACcacaaagauguGGCcGCaAUGGCu -3'
miRNA:   3'- cGCG-CaGCGCGCGUG-----------UCGuUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 115751 0.66 0.828177
Target:  5'- cGCGCGUUGCaGCGCAUucaaacCGcCGCGaGCc -3'
miRNA:   3'- -CGCGCAGCG-CGCGUGuc----GUuGUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.