miRNA display CGI


Results 21 - 40 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 113346 0.8 0.15917
Target:  5'- gGCGgGUCGgGCGCggcugcgucGCuGCGGCGCGGCg -3'
miRNA:   3'- -CGCgCAGCgCGCG---------UGuCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79621 0.8 0.15917
Target:  5'- cCGCaGUCGCGCGUcCAGUuuGCACGGCg -3'
miRNA:   3'- cGCG-CAGCGCGCGuGUCGu-UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 33050 0.8 0.15917
Target:  5'- cCGCGcCGCGCGgAUAGCGuuccGCGCGGCu -3'
miRNA:   3'- cGCGCaGCGCGCgUGUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79295 0.8 0.166143
Target:  5'- cGCGCGU-GCGCGCAUacuGGCGcgugcuuucgaugaGCGCGGCg -3'
miRNA:   3'- -CGCGCAgCGCGCGUG---UCGU--------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 24003 0.8 0.17166
Target:  5'- cGCGCGUCGCaagGCGCACcgGGCGcggGCuCGGCg -3'
miRNA:   3'- -CGCGCAGCG---CGCGUG--UCGU---UGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 69717 0.79 0.185018
Target:  5'- cGCGCGUCGCGCuaacguuuGCACGGaaucGgGCGGCg -3'
miRNA:   3'- -CGCGCAGCGCG--------CGUGUCgu--UgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 90489 0.79 0.185018
Target:  5'- cGCGCGUUcaaacUGCGCGCGGCccacuuGCACGGCg -3'
miRNA:   3'- -CGCGCAGc----GCGCGUGUCGu-----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 30460 0.79 0.187797
Target:  5'- cGCGCGUUGCGCGCGuuuGCAACuuguaaaagaacuCGGCg -3'
miRNA:   3'- -CGCGCAGCGCGCGUgu-CGUUGu------------GCCG- -5'
6745 5' -57.7 NC_001875.2 + 129549 0.79 0.1892
Target:  5'- cGCGCGgccacggCGCGCGCGCAucacgacGuCAACAUGGCc -3'
miRNA:   3'- -CGCGCa------GCGCGCGUGU-------C-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 6943 0.79 0.18967
Target:  5'- aCGCGUCGUGCGUGCGccGCGACaucgccACGGCg -3'
miRNA:   3'- cGCGCAGCGCGCGUGU--CGUUG------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 85461 0.79 0.194426
Target:  5'- cCGUGUCGCuGCacauGCGCAGCAGCuGCGGCc -3'
miRNA:   3'- cGCGCAGCG-CG----CGUGUCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 48365 0.79 0.194426
Target:  5'- aGCGCGcuaaUCGCGCGCccguccgacGCGGCGACAggugcCGGCu -3'
miRNA:   3'- -CGCGC----AGCGCGCG---------UGUCGUUGU-----GCCG- -5'
6745 5' -57.7 NC_001875.2 + 123329 0.79 0.199285
Target:  5'- aCGCGUUGCaGUGCGCGGCGcccACACGGa -3'
miRNA:   3'- cGCGCAGCG-CGCGUGUCGU---UGUGCCg -5'
6745 5' -57.7 NC_001875.2 + 20518 0.79 0.199285
Target:  5'- uUGCGU-GCGCGCaaaACAGCGACGCGuGCa -3'
miRNA:   3'- cGCGCAgCGCGCG---UGUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 64763 0.79 0.199285
Target:  5'- cGCGCGuagaucUCGCGCGC-CAGCuccaGCGGCu -3'
miRNA:   3'- -CGCGC------AGCGCGCGuGUCGuug-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 89109 0.79 0.209321
Target:  5'- uGCGCGUCGcCGCGCGCGaCGAC-CGGg -3'
miRNA:   3'- -CGCGCAGC-GCGCGUGUcGUUGuGCCg -5'
6745 5' -57.7 NC_001875.2 + 73019 0.79 0.209321
Target:  5'- uGCGCaaCGCGCGCAUuuccgcguGCAGCugGGCc -3'
miRNA:   3'- -CGCGcaGCGCGCGUGu-------CGUUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 94499 0.78 0.212935
Target:  5'- cGCGCGgcCGCGCGCaaaguccacaaaguACGGCAGCccguCGGCg -3'
miRNA:   3'- -CGCGCa-GCGCGCG--------------UGUCGUUGu---GCCG- -5'
6745 5' -57.7 NC_001875.2 + 113684 0.78 0.214501
Target:  5'- gGCgGCGUCGCGCGCGCcGCAccaguaacucACAgUGGCg -3'
miRNA:   3'- -CG-CGCAGCGCGCGUGuCGU----------UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 92258 0.78 0.214501
Target:  5'- aCGCGgacCGUGCugAGCAGCGCGGCc -3'
miRNA:   3'- cGCGCagcGCGCGugUCGUUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.