miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 112731 1.12 0.001141
Target:  5'- gGCGCGUCGCGCGCACAGCAACACGGCc -3'
miRNA:   3'- -CGCGCAGCGCGCGUGUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 99920 0.88 0.054379
Target:  5'- aGCGgGcCGCGCGCGCGguGCAGCGCGGCc -3'
miRNA:   3'- -CGCgCaGCGCGCGUGU--CGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 50843 0.86 0.065581
Target:  5'- aCGCGUCGCGCGCcuuuuucaGCAGCAGCuuuugcucggGCGGCg -3'
miRNA:   3'- cGCGCAGCGCGCG--------UGUCGUUG----------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 50492 0.85 0.085511
Target:  5'- gGCGCGUgCGCGCgGCAcCAGCGcgccGCGCGGCa -3'
miRNA:   3'- -CGCGCA-GCGCG-CGU-GUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 94792 0.84 0.090138
Target:  5'- cCGCGUcCGCGCGCguGCAGCGccguGCACGGCc -3'
miRNA:   3'- cGCGCA-GCGCGCG--UGUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 57716 0.84 0.09254
Target:  5'- cGCGuCGUCGCGCGaCACcGCAaagucGCGCGGCg -3'
miRNA:   3'- -CGC-GCAGCGCGC-GUGuCGU-----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 119894 0.84 0.097527
Target:  5'- cGCGCcgccgGUCGCGCGCACAGuCGGCGCGccGCg -3'
miRNA:   3'- -CGCG-----CAGCGCGCGUGUC-GUUGUGC--CG- -5'
6745 5' -57.7 NC_001875.2 + 101745 0.84 0.098555
Target:  5'- -gGCGUacaGCGCGCACAGCAACAaagaaucguccauuuCGGCg -3'
miRNA:   3'- cgCGCAg--CGCGCGUGUCGUUGU---------------GCCG- -5'
6745 5' -57.7 NC_001875.2 + 65792 0.83 0.11705
Target:  5'- cGCgGCGUCgGCGCGCGguGCcuGCGCGGCg -3'
miRNA:   3'- -CG-CGCAG-CGCGCGUguCGu-UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 5588 0.82 0.120121
Target:  5'- uGCGUGUCGCGuCGCaACAGaugcguGCACGGCa -3'
miRNA:   3'- -CGCGCAGCGC-GCG-UGUCgu----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 59455 0.82 0.126162
Target:  5'- uGUGCGUCauguGCGUGCGCAaaauugcGCAGCGCGGCc -3'
miRNA:   3'- -CGCGCAG----CGCGCGUGU-------CGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 36876 0.82 0.129788
Target:  5'- aCGuCGUCGUGCGCGCGGCAcaccGC-CGGCa -3'
miRNA:   3'- cGC-GCAGCGCGCGUGUCGU----UGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 42724 0.82 0.133166
Target:  5'- gGCGCacccgGUCGuCGCGCGCGGCGACgcgcauggugaGCGGCg -3'
miRNA:   3'- -CGCG-----CAGC-GCGCGUGUCGUUG-----------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 32912 0.81 0.136626
Target:  5'- cGCGCGUCGCGCacGCGCAaccgcgccGCGAgcUACGGCg -3'
miRNA:   3'- -CGCGCAGCGCG--CGUGU--------CGUU--GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 113565 0.81 0.13981
Target:  5'- gGCGCGgu-CGCGCACGGCGcgccauugggccaGCACGGCg -3'
miRNA:   3'- -CGCGCagcGCGCGUGUCGU-------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 36092 0.81 0.140168
Target:  5'- cGCGC-UCGCGCG-GCAGC-ACGCGGCg -3'
miRNA:   3'- -CGCGcAGCGCGCgUGUCGuUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79870 0.81 0.140168
Target:  5'- gGCGCGUgguccaCGCGCGCGCGuGCGGCACGucGCg -3'
miRNA:   3'- -CGCGCA------GCGCGCGUGU-CGUUGUGC--CG- -5'
6745 5' -57.7 NC_001875.2 + 44648 0.81 0.147506
Target:  5'- uGCGCgGUCGCGCGuCAagaucucgcCAGcCAGCGCGGCa -3'
miRNA:   3'- -CGCG-CAGCGCGC-GU---------GUC-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 110735 0.81 0.151305
Target:  5'- aCGCGggGCGCGUGCAGUuuaAGCGCGGCg -3'
miRNA:   3'- cGCGCagCGCGCGUGUCG---UUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 64690 0.81 0.155192
Target:  5'- aCGCuGUCcCGCGCagacagccGCAGCAACACGGCg -3'
miRNA:   3'- cGCG-CAGcGCGCG--------UGUCGUUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.