miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 226 0.69 0.647436
Target:  5'- uCGCG-CGCcaucaaauuGCGCACGuuuuuCAGCGCGGCg -3'
miRNA:   3'- cGCGCaGCG---------CGCGUGUc----GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 442 0.66 0.810261
Target:  5'- aGCGUGcCGuCGUGCAcCGGCGaguguucgcgcuuGCACaGGCc -3'
miRNA:   3'- -CGCGCaGC-GCGCGU-GUCGU-------------UGUG-CCG- -5'
6745 5' -57.7 NC_001875.2 + 622 0.71 0.521119
Target:  5'- aGCGCGUUgucaaGCGCGCccugcguuuGCAGCGucucaaacagguccgGgCACGGCa -3'
miRNA:   3'- -CGCGCAG-----CGCGCG---------UGUCGU---------------U-GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 778 0.67 0.793446
Target:  5'- --uCGUCG-GCGCuaaAGCuguGCGCGGCa -3'
miRNA:   3'- cgcGCAGCgCGCGug-UCGu--UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 1027 0.74 0.365871
Target:  5'- aGCGCGUgGCggggcccgagGCGCACAGC-GUugGGCg -3'
miRNA:   3'- -CGCGCAgCG----------CGCGUGUCGuUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 1383 0.7 0.627134
Target:  5'- gGCGCGU-GCuaGCGguGCGucaGCGGCg -3'
miRNA:   3'- -CGCGCAgCGcgCGUguCGUug-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 2298 0.74 0.390322
Target:  5'- cGCGCGcCGUggccGCGCGCAGCu---CGGCc -3'
miRNA:   3'- -CGCGCaGCG----CGCGUGUCGuuguGCCG- -5'
6745 5' -57.7 NC_001875.2 + 2556 0.71 0.565549
Target:  5'- gGCGCGUCGgGCGCAaacucuuuuaccuuaAACACGaGCg -3'
miRNA:   3'- -CGCGCAGCgCGCGUgucg-----------UUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 2666 0.66 0.811131
Target:  5'- gGCGCcggCG-GCGCcuGgGGCAACuGCGGCg -3'
miRNA:   3'- -CGCGca-GCgCGCG--UgUCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 2813 0.68 0.686828
Target:  5'- -gGCGagCGCGaGCGCGGCGacguuggcgaguaGCugGGCg -3'
miRNA:   3'- cgCGCa-GCGCgCGUGUCGU-------------UGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 2849 0.68 0.727497
Target:  5'- aGCGUGUUGCGCcaagaauuuGUAgCAGCggUugGGg -3'
miRNA:   3'- -CGCGCAGCGCG---------CGU-GUCGuuGugCCg -5'
6745 5' -57.7 NC_001875.2 + 2944 0.72 0.460483
Target:  5'- cGCGCGcUgGCGCGCuugcuCGGCA--GCGGUg -3'
miRNA:   3'- -CGCGC-AgCGCGCGu----GUCGUugUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 3016 0.68 0.706798
Target:  5'- uGCGCGUCGcCGUGCaaguuguACAcGCcgUugGGCn -3'
miRNA:   3'- -CGCGCAGC-GCGCG-------UGU-CGuuGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 3052 0.78 0.23861
Target:  5'- aGCGCGUaagaG-GCGCGCAGCGGCgcgccggggucgcccACGGCg -3'
miRNA:   3'- -CGCGCAg---CgCGCGUGUCGUUG---------------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 3109 0.73 0.415816
Target:  5'- gGCGCGgcUCGCG-GCGCAGaccuGgGCGGCg -3'
miRNA:   3'- -CGCGC--AGCGCgCGUGUCgu--UgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 3417 0.68 0.727497
Target:  5'- uUGCGUCcgGCuGCGguUAGCAACACaggaagcuGGCg -3'
miRNA:   3'- cGCGCAG--CG-CGCguGUCGUUGUG--------CCG- -5'
6745 5' -57.7 NC_001875.2 + 3823 0.76 0.305982
Target:  5'- gGC-CGUCGUcgGCGCACGcCGGCGCGGCc -3'
miRNA:   3'- -CGcGCAGCG--CGCGUGUcGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 3853 0.68 0.697838
Target:  5'- aGCaGCagguUCGUGUgGCACGGCAGCACcGCg -3'
miRNA:   3'- -CG-CGc---AGCGCG-CGUGUCGUUGUGcCG- -5'
6745 5' -57.7 NC_001875.2 + 4383 0.72 0.461403
Target:  5'- cCGCGUgGCGCGCugcucaaauCGGCcaucgucuugcucauGCACGGCg -3'
miRNA:   3'- cGCGCAgCGCGCGu--------GUCGu--------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 4851 0.76 0.31304
Target:  5'- uUGCGgaaCGCGUGCACAGCucguGCacgcuGCGGCg -3'
miRNA:   3'- cGCGCa--GCGCGCGUGUCGu---UG-----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.