miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 116873 0.66 0.811131
Target:  5'- gGCGUGUUGgGCgacgGCACAaacucuucgucuGCGcuagccgcGCGCGGCg -3'
miRNA:   3'- -CGCGCAGCgCG----CGUGU------------CGU--------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 39168 0.66 0.811131
Target:  5'- cCGCGagGCGgGC-CGGCGguuGCGUGGCg -3'
miRNA:   3'- cGCGCagCGCgCGuGUCGU---UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 23815 0.66 0.802364
Target:  5'- cGCgGCGUCGgGCGCGCcGUGucucUGGCg -3'
miRNA:   3'- -CG-CGCAGCgCGCGUGuCGUugu-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 122470 0.66 0.811131
Target:  5'- gGCuGCG--GCGCGCGCAGCAccuuuGCGauGCc -3'
miRNA:   3'- -CG-CGCagCGCGCGUGUCGU-----UGUgcCG- -5'
6745 5' -57.7 NC_001875.2 + 79093 0.66 0.818884
Target:  5'- -gGCGUaGUGCGCAUaaaacuuGGC--CACGGCg -3'
miRNA:   3'- cgCGCAgCGCGCGUG-------UCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 89525 0.66 0.801479
Target:  5'- -gGCGUCGCGC-CGauaGGCGggaucgucuauacGCACGcGCa -3'
miRNA:   3'- cgCGCAGCGCGcGUg--UCGU-------------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 110868 0.66 0.819737
Target:  5'- uUGCGcUGCGgGCAUuGCGACGCGuuuGCg -3'
miRNA:   3'- cGCGCaGCGCgCGUGuCGUUGUGC---CG- -5'
6745 5' -57.7 NC_001875.2 + 109937 0.66 0.802364
Target:  5'- aCGCGcCGCucacCGCGgAGCAGCGCGa- -3'
miRNA:   3'- cGCGCaGCGc---GCGUgUCGUUGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 39930 0.66 0.811131
Target:  5'- -aGCGgccUGCGCGCAauuuGCG-CGCGGUu -3'
miRNA:   3'- cgCGCa--GCGCGCGUgu--CGUuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 75588 0.66 0.802364
Target:  5'- -gGCGUCG-GCGU-CGGCGAUggcguCGGCg -3'
miRNA:   3'- cgCGCAGCgCGCGuGUCGUUGu----GCCG- -5'
6745 5' -57.7 NC_001875.2 + 74066 0.66 0.814593
Target:  5'- gGCGUGgaUUGUGCGCGCcccucgcaaaaccuGCAGUugGGCa -3'
miRNA:   3'- -CGCGC--AGCGCGCGUGu-------------CGUUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 77253 0.66 0.811131
Target:  5'- -aGCcUCGCGCaaaGCAGCGAUuCGGUg -3'
miRNA:   3'- cgCGcAGCGCGcg-UGUCGUUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 118028 0.66 0.811131
Target:  5'- cCGCGaccaGUGCG-ACGGCAACGCcGCg -3'
miRNA:   3'- cGCGCag--CGCGCgUGUCGUUGUGcCG- -5'
6745 5' -57.7 NC_001875.2 + 442 0.66 0.810261
Target:  5'- aGCGUGcCGuCGUGCAcCGGCGaguguucgcgcuuGCACaGGCc -3'
miRNA:   3'- -CGCGCaGC-GCGCGU-GUCGU-------------UGUG-CCG- -5'
6745 5' -57.7 NC_001875.2 + 48231 0.66 0.818884
Target:  5'- aGCGCGUCaauugcuGCaaGUugAGCuACGgCGGCg -3'
miRNA:   3'- -CGCGCAG-------CGcgCGugUCGuUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 61800 0.66 0.811131
Target:  5'- cGUcCGUCGCagcgacCGCACAaucaauGcCAACACGGCg -3'
miRNA:   3'- -CGcGCAGCGc-----GCGUGU------C-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 7392 0.66 0.819737
Target:  5'- cGCG-GUUGCGCGaCGCGGUcgcaaaacauAUugGGCc -3'
miRNA:   3'- -CGCgCAGCGCGC-GUGUCGu---------UGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 110585 0.66 0.844521
Target:  5'- cCGCGcCGCGCGCGCgccuggaccAGCuuCGCcaacuGGUg -3'
miRNA:   3'- cGCGCaGCGCGCGUG---------UCGuuGUG-----CCG- -5'
6745 5' -57.7 NC_001875.2 + 32877 0.66 0.811131
Target:  5'- -aGCGuUCGCuGCaGCGCuGCAA-ACGGCu -3'
miRNA:   3'- cgCGC-AGCG-CG-CGUGuCGUUgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 107835 0.66 0.811131
Target:  5'- cGCGCccgGUGCGCcuuGCGACGCGcGCg -3'
miRNA:   3'- -CGCGcagCGCGCGuguCGUUGUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.