miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 97735 0.77 0.247924
Target:  5'- cCGCGagCGCGCGCGCucguGCAACccCGGCa -3'
miRNA:   3'- cGCGCa-GCGCGCGUGu---CGUUGu-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 6943 0.79 0.18967
Target:  5'- aCGCGUCGUGCGUGCGccGCGACaucgccACGGCg -3'
miRNA:   3'- cGCGCAGCGCGCGUGU--CGUUG------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 85461 0.79 0.194426
Target:  5'- cCGUGUCGCuGCacauGCGCAGCAGCuGCGGCc -3'
miRNA:   3'- cGCGCAGCG-CG----CGUGUCGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 48365 0.79 0.194426
Target:  5'- aGCGCGcuaaUCGCGCGCccguccgacGCGGCGACAggugcCGGCu -3'
miRNA:   3'- -CGCGC----AGCGCGCG---------UGUCGUUGU-----GCCG- -5'
6745 5' -57.7 NC_001875.2 + 64763 0.79 0.199285
Target:  5'- cGCGCGuagaucUCGCGCGC-CAGCuccaGCGGCu -3'
miRNA:   3'- -CGCGC------AGCGCGCGuGUCGuug-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 92258 0.78 0.214501
Target:  5'- aCGCGgacCGUGCugAGCAGCGCGGCc -3'
miRNA:   3'- cGCGCagcGCGCGugUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 31976 0.78 0.230702
Target:  5'- cGCGUGUggCGCGCGUACGGCcgguuugugAGCGgCGGCg -3'
miRNA:   3'- -CGCGCA--GCGCGCGUGUCG---------UUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 36658 0.78 0.230702
Target:  5'- cCGCGUCGUGCGCGCugAGCu-CGgGGCg -3'
miRNA:   3'- cGCGCAGCGCGCGUG--UCGuuGUgCCG- -5'
6745 5' -57.7 NC_001875.2 + 50020 0.77 0.242068
Target:  5'- cGCGCGUgGuCGcCGgGCGGCGAgGCGGCc -3'
miRNA:   3'- -CGCGCAgC-GC-GCgUGUCGUUgUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 129549 0.79 0.1892
Target:  5'- cGCGCGgccacggCGCGCGCGCAucacgacGuCAACAUGGCc -3'
miRNA:   3'- -CGCGCa------GCGCGCGUGU-------C-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 30460 0.79 0.187797
Target:  5'- cGCGCGUUGCGCGCGuuuGCAACuuguaaaagaacuCGGCg -3'
miRNA:   3'- -CGCGCAGCGCGCGUgu-CGUUGu------------GCCG- -5'
6745 5' -57.7 NC_001875.2 + 90489 0.79 0.185018
Target:  5'- cGCGCGUUcaaacUGCGCGCGGCccacuuGCACGGCg -3'
miRNA:   3'- -CGCGCAGc----GCGCGUGUCGu-----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 57716 0.84 0.09254
Target:  5'- cGCGuCGUCGCGCGaCACcGCAaagucGCGCGGCg -3'
miRNA:   3'- -CGC-GCAGCGCGC-GUGuCGU-----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 36876 0.82 0.129788
Target:  5'- aCGuCGUCGUGCGCGCGGCAcaccGC-CGGCa -3'
miRNA:   3'- cGC-GCAGCGCGCGUGUCGU----UGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 42724 0.82 0.133166
Target:  5'- gGCGCacccgGUCGuCGCGCGCGGCGACgcgcauggugaGCGGCg -3'
miRNA:   3'- -CGCG-----CAGC-GCGCGUGUCGUUG-----------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 32912 0.81 0.136626
Target:  5'- cGCGCGUCGCGCacGCGCAaccgcgccGCGAgcUACGGCg -3'
miRNA:   3'- -CGCGCAGCGCG--CGUGU--------CGUU--GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 113565 0.81 0.13981
Target:  5'- gGCGCGgu-CGCGCACGGCGcgccauugggccaGCACGGCg -3'
miRNA:   3'- -CGCGCagcGCGCGUGUCGU-------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 110735 0.81 0.151305
Target:  5'- aCGCGggGCGCGUGCAGUuuaAGCGCGGCg -3'
miRNA:   3'- cGCGCagCGCGCGUGUCG---UUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79621 0.8 0.15917
Target:  5'- cCGCaGUCGCGCGUcCAGUuuGCACGGCg -3'
miRNA:   3'- cGCG-CAGCGCGCGuGUCGu-UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 69717 0.79 0.185018
Target:  5'- cGCGCGUCGCGCuaacguuuGCACGGaaucGgGCGGCg -3'
miRNA:   3'- -CGCGCAGCGCG--------CGUGUCgu--UgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.