miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 112731 1.12 0.001141
Target:  5'- gGCGCGUCGCGCGCACAGCAACACGGCc -3'
miRNA:   3'- -CGCGCAGCGCGCGUGUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 20518 0.79 0.199285
Target:  5'- uUGCGU-GCGCGCaaaACAGCGACGCGuGCa -3'
miRNA:   3'- cGCGCAgCGCGCG---UGUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 73019 0.79 0.209321
Target:  5'- uGCGCaaCGCGCGCAUuuccgcguGCAGCugGGCc -3'
miRNA:   3'- -CGCGcaGCGCGCGUGu-------CGUUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 110585 0.66 0.844521
Target:  5'- cCGCGcCGCGCGCGCgccuggaccAGCuuCGCcaacuGGUg -3'
miRNA:   3'- cGCGCaGCGCGCGUG---------UCGuuGUG-----CCG- -5'
6745 5' -57.7 NC_001875.2 + 119894 0.84 0.097527
Target:  5'- cGCGCcgccgGUCGCGCGCACAGuCGGCGCGccGCg -3'
miRNA:   3'- -CGCG-----CAGCGCGCGUGUC-GUUGUGC--CG- -5'
6745 5' -57.7 NC_001875.2 + 101745 0.84 0.098555
Target:  5'- -gGCGUacaGCGCGCACAGCAACAaagaaucguccauuuCGGCg -3'
miRNA:   3'- cgCGCAg--CGCGCGUGUCGUUGU---------------GCCG- -5'
6745 5' -57.7 NC_001875.2 + 5588 0.82 0.120121
Target:  5'- uGCGUGUCGCGuCGCaACAGaugcguGCACGGCa -3'
miRNA:   3'- -CGCGCAGCGC-GCG-UGUCgu----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 59455 0.82 0.126162
Target:  5'- uGUGCGUCauguGCGUGCGCAaaauugcGCAGCGCGGCc -3'
miRNA:   3'- -CGCGCAG----CGCGCGUGU-------CGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 44648 0.81 0.147506
Target:  5'- uGCGCgGUCGCGCGuCAagaucucgcCAGcCAGCGCGGCa -3'
miRNA:   3'- -CGCG-CAGCGCGC-GU---------GUC-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 24003 0.8 0.17166
Target:  5'- cGCGCGUCGCaagGCGCACcgGGCGcggGCuCGGCg -3'
miRNA:   3'- -CGCGCAGCG---CGCGUG--UCGU---UGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 113346 0.8 0.15917
Target:  5'- gGCGgGUCGgGCGCggcugcgucGCuGCGGCGCGGCg -3'
miRNA:   3'- -CGCgCAGCgCGCG---------UGuCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79870 0.81 0.140168
Target:  5'- gGCGCGUgguccaCGCGCGCGCGuGCGGCACGucGCg -3'
miRNA:   3'- -CGCGCA------GCGCGCGUGU-CGUUGUGC--CG- -5'
6745 5' -57.7 NC_001875.2 + 99920 0.88 0.054379
Target:  5'- aGCGgGcCGCGCGCGCGguGCAGCGCGGCc -3'
miRNA:   3'- -CGCgCaGCGCGCGUGU--CGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 33050 0.8 0.15917
Target:  5'- cCGCGcCGCGCGgAUAGCGuuccGCGCGGCu -3'
miRNA:   3'- cGCGCaGCGCGCgUGUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 50492 0.85 0.085511
Target:  5'- gGCGCGUgCGCGCgGCAcCAGCGcgccGCGCGGCa -3'
miRNA:   3'- -CGCGCA-GCGCG-CGU-GUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 36092 0.81 0.140168
Target:  5'- cGCGC-UCGCGCG-GCAGC-ACGCGGCg -3'
miRNA:   3'- -CGCGcAGCGCGCgUGUCGuUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 79295 0.8 0.166143
Target:  5'- cGCGCGU-GCGCGCAUacuGGCGcgugcuuucgaugaGCGCGGCg -3'
miRNA:   3'- -CGCGCAgCGCGCGUG---UCGU--------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 123329 0.79 0.199285
Target:  5'- aCGCGUUGCaGUGCGCGGCGcccACACGGa -3'
miRNA:   3'- cGCGCAGCG-CGCGUGUCGU---UGUGCCg -5'
6745 5' -57.7 NC_001875.2 + 94792 0.84 0.090138
Target:  5'- cCGCGUcCGCGCGCguGCAGCGccguGCACGGCc -3'
miRNA:   3'- cGCGCA-GCGCGCG--UGUCGU----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 65792 0.83 0.11705
Target:  5'- cGCgGCGUCgGCGCGCGguGCcuGCGCGGCg -3'
miRNA:   3'- -CG-CGCAG-CGCGCGUguCGu-UGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.