miRNA display CGI


Results 21 - 40 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 5513 0.66 0.819737
Target:  5'- -gGCG-CaCGCGCGCAGUuuACGcCGGCc -3'
miRNA:   3'- cgCGCaGcGCGCGUGUCGu-UGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 5550 0.7 0.616985
Target:  5'- cGCGCGUUaagGUGCcaguCACGGCGACuguGCGGUu -3'
miRNA:   3'- -CGCGCAG---CGCGc---GUGUCGUUG---UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 5588 0.82 0.120121
Target:  5'- uGCGUGUCGCGuCGCaACAGaugcguGCACGGCa -3'
miRNA:   3'- -CGCGCAGCGC-GCG-UGUCgu----UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 5779 0.69 0.667691
Target:  5'- aGCGCGUCcUG-GUACGGCAuuuGC-CGGCu -3'
miRNA:   3'- -CGCGCAGcGCgCGUGUCGU---UGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 5925 0.69 0.657574
Target:  5'- -gGCGUUggguaGCGcCGCGCAGgugGGCGCGGCc -3'
miRNA:   3'- cgCGCAG-----CGC-GCGUGUCg--UUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 6197 0.67 0.746879
Target:  5'- cGCGCGccguuucaaaGCGCGCAauugcguccguCGGCGACACGc- -3'
miRNA:   3'- -CGCGCag--------CGCGCGU-----------GUCGUUGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 6373 0.67 0.775188
Target:  5'- aUGuCGUCGuCGgGCACcgcGCGGCcCGGCa -3'
miRNA:   3'- cGC-GCAGC-GCgCGUGu--CGUUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 6444 0.7 0.576572
Target:  5'- cGCGcCGUCGUaguaGCGCGCGGUguucgucaggucGAuUACGGCg -3'
miRNA:   3'- -CGC-GCAGCG----CGCGUGUCG------------UU-GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 6725 0.68 0.731402
Target:  5'- aGCGCGg-GCGacauaaaccgcaucaCGCGCAGCAACGauGUg -3'
miRNA:   3'- -CGCGCagCGC---------------GCGUGUCGUUGUgcCG- -5'
6745 5' -57.7 NC_001875.2 + 6861 0.75 0.342497
Target:  5'- uGCaCGUaaaGCGgaCGCGCGGCGACGCGGUc -3'
miRNA:   3'- -CGcGCAg--CGC--GCGUGUCGUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 6943 0.79 0.18967
Target:  5'- aCGCGUCGUGCGUGCGccGCGACaucgccACGGCg -3'
miRNA:   3'- cGCGCAGCGCGCGUGU--CGUUG------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 7392 0.66 0.819737
Target:  5'- cGCG-GUUGCGCGaCGCGGUcgcaaaacauAUugGGCc -3'
miRNA:   3'- -CGCgCAGCGCGC-GUGUCGu---------UGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 7445 0.68 0.727497
Target:  5'- uGCGCGcCG-GCGauuGCGGCGGugUACGGCc -3'
miRNA:   3'- -CGCGCaGCgCGCg--UGUCGUU--GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 7842 0.7 0.599761
Target:  5'- aGCGUgGUCGCGCGCaacauGCAGCcguauucuuugcgagAACaagcgccGCGGCa -3'
miRNA:   3'- -CGCG-CAGCGCGCG-----UGUCG---------------UUG-------UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 8075 0.66 0.811131
Target:  5'- aGCGCGUC-CGCGUuguuGUcGCgACGGCc -3'
miRNA:   3'- -CGCGCAGcGCGCGugu-CGuUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 8509 0.72 0.497977
Target:  5'- cGUGUGggCGcCGCGCACuGCAACGCGu- -3'
miRNA:   3'- -CGCGCa-GC-GCGCGUGuCGUUGUGCcg -5'
6745 5' -57.7 NC_001875.2 + 9131 0.7 0.606847
Target:  5'- cCGUGgacUCGCGCGC-CAGUucggugucCACGGCg -3'
miRNA:   3'- cGCGC---AGCGCGCGuGUCGuu------GUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 9524 0.68 0.707791
Target:  5'- gGCGCGgaaGcCGCGCccgAUAG-GACGCGGCu -3'
miRNA:   3'- -CGCGCag-C-GCGCG---UGUCgUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 9635 0.66 0.802364
Target:  5'- uGCGUG-CGCGCGC-CGuGCGuguuuCGCGaGCu -3'
miRNA:   3'- -CGCGCaGCGCGCGuGU-CGUu----GUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 9703 0.73 0.415816
Target:  5'- cGC-CGUCGUGCGCGcCGGCcGCGCcGCg -3'
miRNA:   3'- -CGcGCAGCGCGCGU-GUCGuUGUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.