miRNA display CGI


Results 1 - 20 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 131510 0.75 0.334949
Target:  5'- cUGCGgCGCGCgGUGCAGCGGCuggaaGCGGCg -3'
miRNA:   3'- cGCGCaGCGCG-CGUGUCGUUG-----UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 131349 0.75 0.32022
Target:  5'- gGCGCGggaUCGCGUGUAUcuuuGCGACuACGGCc -3'
miRNA:   3'- -CGCGC---AGCGCGCGUGu---CGUUG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 130320 0.68 0.707791
Target:  5'- cGgGCGUUGUGUGUACAaagGACGgCGGCg -3'
miRNA:   3'- -CgCGCAGCGCGCGUGUcg-UUGU-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 130130 0.7 0.596727
Target:  5'- -gGUGUCGCGCcCGCAGCAuuugUGGCc -3'
miRNA:   3'- cgCGCAGCGCGcGUGUCGUugu-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 129549 0.79 0.1892
Target:  5'- cGCGCGgccacggCGCGCGCGCAucacgacGuCAACAUGGCc -3'
miRNA:   3'- -CGCGCa------GCGCGCGUGU-------C-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 128906 0.68 0.697838
Target:  5'- aGCGCGccaGCGCGCGguGaauuuGCACgaGGCg -3'
miRNA:   3'- -CGCGCag-CGCGCGUguCgu---UGUG--CCG- -5'
6745 5' -57.7 NC_001875.2 + 128794 0.71 0.556572
Target:  5'- uGCGCGccucuuaCGCGCuGCccaACGGCGuguacaacuuGCACGGCg -3'
miRNA:   3'- -CGCGCa------GCGCG-CG---UGUCGU----------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 128750 0.72 0.47905
Target:  5'- cGCGCcccggCGCGUGCACgccgugGGCGACccCGGCg -3'
miRNA:   3'- -CGCGca---GCGCGCGUG------UCGUUGu-GCCG- -5'
6745 5' -57.7 NC_001875.2 + 128182 0.74 0.365871
Target:  5'- gGCGCG-CaaGCGCGCAGCAcacacGCcaGCGGCu -3'
miRNA:   3'- -CGCGCaGcgCGCGUGUCGU-----UG--UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 127414 0.66 0.83644
Target:  5'- -gGCGgCGCGCGU-CAGCAugccgccguGCAUGaGCa -3'
miRNA:   3'- cgCGCaGCGCGCGuGUCGU---------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 127248 0.74 0.390322
Target:  5'- aGCGCGgccucuUCGUGCGCAUgucgGGC-AUGCGGCu -3'
miRNA:   3'- -CGCGC------AGCGCGCGUG----UCGuUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 126958 0.7 0.576572
Target:  5'- gGCGCGaguuaaauaguUUGCGC-CGCAGCGuGCACGaGCu -3'
miRNA:   3'- -CGCGC-----------AGCGCGcGUGUCGU-UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 126844 0.72 0.460483
Target:  5'- aGUGCacaaGUGcCGCACAGCAGCgagGCGGCu -3'
miRNA:   3'- -CGCGcag-CGC-GCGUGUCGUUG---UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 126741 0.66 0.811131
Target:  5'- cCGuCGUUaGCGCGCGCAGCccCAUuaGGUg -3'
miRNA:   3'- cGC-GCAG-CGCGCGUGUCGuuGUG--CCG- -5'
6745 5' -57.7 NC_001875.2 + 126290 0.69 0.654534
Target:  5'- cGC-CGUgacuggcaccuuaaCGCGCGCcucaACGGCGGC-CGGCg -3'
miRNA:   3'- -CGcGCA--------------GCGCGCG----UGUCGUUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 126008 0.7 0.576572
Target:  5'- aCGCGg-GCGCGUccagauCGGCGGCGCuGGCa -3'
miRNA:   3'- cGCGCagCGCGCGu-----GUCGUUGUG-CCG- -5'
6745 5' -57.7 NC_001875.2 + 125595 0.69 0.647436
Target:  5'- aGUGUGUCGCuacaugGUGgAGCGGCugGGCg -3'
miRNA:   3'- -CGCGCAGCGcg----CGUgUCGUUGugCCG- -5'
6745 5' -57.7 NC_001875.2 + 125592 0.68 0.697838
Target:  5'- -gGCcUCGUuuGCGuCACAGuCGACGCGGUg -3'
miRNA:   3'- cgCGcAGCG--CGC-GUGUC-GUUGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 125201 0.68 0.71768
Target:  5'- cGCGCGcaauguuucccgaUCGCuggcacgaguacaccGCGUGCGGCGcggucauugaggguACGCGGCu -3'
miRNA:   3'- -CGCGC-------------AGCG---------------CGCGUGUCGU--------------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 124975 0.71 0.546646
Target:  5'- cCGCGUCGC-CGCGCGuccgcuuuacguGCAAguUGGCg -3'
miRNA:   3'- cGCGCAGCGcGCGUGU------------CGUUguGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.