miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6747 5' -53.5 NC_001875.2 + 22871 0.66 0.939749
Target:  5'- uGCgucCAGCaGCUugucggccaauucuuGCAGUUGGGCGGAUu- -3'
miRNA:   3'- -CGa--GUCG-CGG---------------UGUCAACCCGUUUGuu -5'
6747 5' -53.5 NC_001875.2 + 119237 0.66 0.937752
Target:  5'- ---uGGCGCCAacauCAGUUGGGUcuACGc -3'
miRNA:   3'- cgagUCGCGGU----GUCAACCCGuuUGUu -5'
6747 5' -53.5 NC_001875.2 + 3877 0.66 0.927138
Target:  5'- aGCaCcGCGCCGCcaAGcUGGGCAGGCu- -3'
miRNA:   3'- -CGaGuCGCGGUG--UCaACCCGUUUGuu -5'
6747 5' -53.5 NC_001875.2 + 57580 0.66 0.917889
Target:  5'- gGCgCGGCGUCGCgcuguccagaagcguGGUguaGGGCAGGCAc -3'
miRNA:   3'- -CGaGUCGCGGUG---------------UCAa--CCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 51937 0.66 0.915472
Target:  5'- aGCgugCGGCGCUACu-UUGGGCGcGACGu -3'
miRNA:   3'- -CGa--GUCGCGGUGucAACCCGU-UUGUu -5'
6747 5' -53.5 NC_001875.2 + 125964 0.66 0.915472
Target:  5'- gGUUCGGCGCauCGGcgaGGGCAAACGc -3'
miRNA:   3'- -CGAGUCGCGguGUCaa-CCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 86096 0.66 0.915472
Target:  5'- gGCUCGGCGCCGC-GUUuacGGCuucGCGu -3'
miRNA:   3'- -CGAGUCGCGGUGuCAAc--CCGuu-UGUu -5'
6747 5' -53.5 NC_001875.2 + 59341 0.67 0.902761
Target:  5'- gGCUgCAGUGCCACAuuugcugcucGgUGGGCGAAauCAAa -3'
miRNA:   3'- -CGA-GUCGCGGUGU----------CaACCCGUUU--GUU- -5'
6747 5' -53.5 NC_001875.2 + 2844 0.67 0.902761
Target:  5'- aGCUgGGCGaauaguuuaACAGggUGGGCGAGCGc -3'
miRNA:   3'- -CGAgUCGCgg-------UGUCa-ACCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 30493 0.67 0.902761
Target:  5'- aCUCGGCGUC-CAGUUuGGCG-ACAAa -3'
miRNA:   3'- cGAGUCGCGGuGUCAAcCCGUuUGUU- -5'
6747 5' -53.5 NC_001875.2 + 79846 0.67 0.889023
Target:  5'- uGCUCAGCugGCUAauGUUGGGguGGCGc -3'
miRNA:   3'- -CGAGUCG--CGGUguCAACCCguUUGUu -5'
6747 5' -53.5 NC_001875.2 + 93473 0.67 0.881779
Target:  5'- -gUCAGCGCCggguggcaacACAcUUGGcGCAAGCGAc -3'
miRNA:   3'- cgAGUCGCGG----------UGUcAACC-CGUUUGUU- -5'
6747 5' -53.5 NC_001875.2 + 38768 0.68 0.87429
Target:  5'- -gUCGGCGUC-CuGUUGGGCGGAgAGc -3'
miRNA:   3'- cgAGUCGCGGuGuCAACCCGUUUgUU- -5'
6747 5' -53.5 NC_001875.2 + 121413 0.68 0.866563
Target:  5'- aGCUgCuGCGCCAaauGUUGGGUAGuGCAGc -3'
miRNA:   3'- -CGA-GuCGCGGUgu-CAACCCGUU-UGUU- -5'
6747 5' -53.5 NC_001875.2 + 54358 0.68 0.866563
Target:  5'- ----cGCGCCcgGCGcGUUGGGCGAGCGc -3'
miRNA:   3'- cgaguCGCGG--UGU-CAACCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 93280 0.68 0.85042
Target:  5'- uGCg-GGCgGCCACgGGUUGGGCAAAa-- -3'
miRNA:   3'- -CGagUCG-CGGUG-UCAACCCGUUUguu -5'
6747 5' -53.5 NC_001875.2 + 78471 0.68 0.85042
Target:  5'- cGCUCGcuGCGCCGCAGUuugaacagguUGucGGUGGACGAc -3'
miRNA:   3'- -CGAGU--CGCGGUGUCA----------AC--CCGUUUGUU- -5'
6747 5' -53.5 NC_001875.2 + 77055 0.68 0.833405
Target:  5'- uGCU-AGUGCCGCccGGUUGGGaAAACGAu -3'
miRNA:   3'- -CGAgUCGCGGUG--UCAACCCgUUUGUU- -5'
6747 5' -53.5 NC_001875.2 + 102049 0.68 0.830782
Target:  5'- cGC-CAGCGCCcgcACAGUcccgcacgaucauuUgGGGCGAGCAc -3'
miRNA:   3'- -CGaGUCGCGG---UGUCA--------------A-CCCGUUUGUu -5'
6747 5' -53.5 NC_001875.2 + 86922 0.69 0.824592
Target:  5'- cGCUgaAGCGCCGCcuagAGUgcgaGGGCGAGCc- -3'
miRNA:   3'- -CGAg-UCGCGGUG----UCAa---CCCGUUUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.