miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6749 3' -50.6 NC_001875.2 + 129337 0.7 0.905092
Target:  5'- cGAcAACUacGCGGCCGCauGAcGGCCGUUa- -3'
miRNA:   3'- -CUuUUGA--UGCUGGCG--CU-CCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 128004 0.73 0.789911
Target:  5'- uGGAGGCUGCGGCCGCGccGgCGUg-- -3'
miRNA:   3'- -CUUUUGAUGCUGGCGCucCgGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 126935 0.66 0.985591
Target:  5'- --cGACUACGACCGgGAGcaGCUGc--- -3'
miRNA:   3'- cuuUUGAUGCUGGCgCUC--CGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 124959 0.67 0.981643
Target:  5'- gGAAAGCUcuguuUGACCGCGucGCCGc--- -3'
miRNA:   3'- -CUUUUGAu----GCUGGCGCucCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 120739 0.69 0.934636
Target:  5'- --cAGCUGCGgcGCCGagaCGGGGCCGUg-- -3'
miRNA:   3'- cuuUUGAUGC--UGGC---GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 105368 1.07 0.010473
Target:  5'- cGAAAACUACGACCGCGAGGCCGUUUUg -3'
miRNA:   3'- -CUUUUGAUGCUGGCGCUCCGGCAAAA- -5'
6749 3' -50.6 NC_001875.2 + 104123 0.69 0.92926
Target:  5'- aGGAucuACUGCGcGCCGUGGGGCCc---- -3'
miRNA:   3'- -CUUu--UGAUGC-UGGCGCUCCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 101145 0.68 0.953497
Target:  5'- cGAAAACgauuuCGACCaCGuGGCCGUg-- -3'
miRNA:   3'- -CUUUUGau---GCUGGcGCuCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 100985 0.66 0.99012
Target:  5'- ---cGCUGCaGGCCGCGGcguuugcGGCgGUUUUg -3'
miRNA:   3'- cuuuUGAUG-CUGGCGCU-------CCGgCAAAA- -5'
6749 3' -50.6 NC_001875.2 + 100801 0.67 0.971395
Target:  5'- --cGACgUACGGCCGCGccGGGUCGg--- -3'
miRNA:   3'- cuuUUG-AUGCUGGCGC--UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 99158 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 99134 0.7 0.905092
Target:  5'- aGAAAuCUACGACCGgGAGGaCGg--- -3'
miRNA:   3'- -CUUUuGAUGCUGGCgCUCCgGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 98875 0.68 0.968292
Target:  5'- ---cGCUAaUGugCGCGGGcGCCGUUUc -3'
miRNA:   3'- cuuuUGAU-GCugGCGCUC-CGGCAAAa -5'
6749 3' -50.6 NC_001875.2 + 96937 0.66 0.983707
Target:  5'- ------gGCGACCGCGGcGGCCa---- -3'
miRNA:   3'- cuuuugaUGCUGGCGCU-CCGGcaaaa -5'
6749 3' -50.6 NC_001875.2 + 90834 0.66 0.988854
Target:  5'- -uGAGC-ACGACCaCGcGGCCGUUg- -3'
miRNA:   3'- cuUUUGaUGCUGGcGCuCCGGCAAaa -5'
6749 3' -50.6 NC_001875.2 + 90611 0.67 0.974273
Target:  5'- ------cGCGACgGcCGAGGCCGUg-- -3'
miRNA:   3'- cuuuugaUGCUGgC-GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 89502 0.69 0.934636
Target:  5'- ---cGCUGCGACUGCGcuuccgccugGGGCCGc--- -3'
miRNA:   3'- cuuuUGAUGCUGGCGC----------UCCGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 88750 0.67 0.981643
Target:  5'- cAAAACUGCGGCgaguuCGAGGUCGUg-- -3'
miRNA:   3'- cUUUUGAUGCUGgc---GCUCCGGCAaaa -5'
6749 3' -50.6 NC_001875.2 + 86377 0.67 0.981643
Target:  5'- -uAGACgcGCGGCUGCGGGcGCCGa--- -3'
miRNA:   3'- cuUUUGa-UGCUGGCGCUC-CGGCaaaa -5'
6749 3' -50.6 NC_001875.2 + 74755 0.66 0.985591
Target:  5'- --uGugUACcACaGCGAGGCCGUUg- -3'
miRNA:   3'- cuuUugAUGcUGgCGCUCCGGCAAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.