miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 3' -52.9 NC_001875.2 + 104944 0.71 0.767306
Target:  5'- aGCAGAACGCGCGcguAACGcccaacauauuuuauGGCCUGa- -3'
miRNA:   3'- aCGUUUUGCGCGUu--UUGC---------------CCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 82365 0.71 0.772229
Target:  5'- gUGCAAAcucgggcGCGCGCGGAACcacGGCgCCGUc -3'
miRNA:   3'- -ACGUUU-------UGCGCGUUUUGc--CCG-GGCAa -5'
6757 3' -52.9 NC_001875.2 + 21778 0.71 0.77321
Target:  5'- aGCGucucuGCGCGCGAcACGGGuUCCGg- -3'
miRNA:   3'- aCGUuu---UGCGCGUUuUGCCC-GGGCaa -5'
6757 3' -52.9 NC_001875.2 + 1023 0.71 0.77321
Target:  5'- uUGCA--GCGCGU--GGCgGGGCCCGa- -3'
miRNA:   3'- -ACGUuuUGCGCGuuUUG-CCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 24010 0.7 0.792519
Target:  5'- cGCAAGGCGCacCGGGcGCGGGCUCGg- -3'
miRNA:   3'- aCGUUUUGCGc-GUUU-UGCCCGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 100583 0.7 0.792519
Target:  5'- cUGCGucGACGCGUAc-GCGGGCCgGg- -3'
miRNA:   3'- -ACGUu-UUGCGCGUuuUGCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 12180 0.7 0.801941
Target:  5'- aUGCugAGAAUGCGCAGcuUGGGCgCGUa -3'
miRNA:   3'- -ACG--UUUUGCGCGUUuuGCCCGgGCAa -5'
6757 3' -52.9 NC_001875.2 + 86739 0.7 0.801941
Target:  5'- cGCAcaugaAGGCGCGCAcguCGGGCaCCGc- -3'
miRNA:   3'- aCGU-----UUUGCGCGUuuuGCCCG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 123334 0.7 0.810277
Target:  5'- uUGCAGuGCGCgGCGcccacacGGACGGcGCCCGg- -3'
miRNA:   3'- -ACGUUuUGCG-CGU-------UUUGCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 113547 0.7 0.811194
Target:  5'- gGCcaauAAGCGCGCGAAGCGGcCuuGUg -3'
miRNA:   3'- aCGu---UUUGCGCGUUUUGCCcGggCAa -5'
6757 3' -52.9 NC_001875.2 + 98608 0.7 0.811194
Target:  5'- cGCAaaGAGCGCGCcacguCGGaGCCCGc- -3'
miRNA:   3'- aCGU--UUUGCGCGuuuu-GCC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 117341 0.7 0.811194
Target:  5'- cGCGGcGCGgGCGAAccgGCGGGCCgGc- -3'
miRNA:   3'- aCGUUuUGCgCGUUU---UGCCCGGgCaa -5'
6757 3' -52.9 NC_001875.2 + 44381 0.7 0.819371
Target:  5'- uUGCAAAACGCgaugucGCAAAACGcggucuuGGCCCu-- -3'
miRNA:   3'- -ACGUUUUGCG------CGUUUUGC-------CCGGGcaa -5'
6757 3' -52.9 NC_001875.2 + 18688 0.7 0.82027
Target:  5'- gGCGAAACGUaCAAGGCGGcGCUgGUg -3'
miRNA:   3'- aCGUUUUGCGcGUUUUGCC-CGGgCAa -5'
6757 3' -52.9 NC_001875.2 + 32057 0.7 0.82027
Target:  5'- gUGCGcGACGCguaccGCAAAAUGGcGCUCGUg -3'
miRNA:   3'- -ACGUuUUGCG-----CGUUUUGCC-CGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 32867 0.69 0.829158
Target:  5'- aGCGuucACGCGgAAAGCGGcGCCgGUUc -3'
miRNA:   3'- aCGUuu-UGCGCgUUUUGCC-CGGgCAA- -5'
6757 3' -52.9 NC_001875.2 + 50030 0.69 0.83785
Target:  5'- cGCcGGGCG-GCGAGGCGgccGGCCCGUc -3'
miRNA:   3'- aCGuUUUGCgCGUUUUGC---CCGGGCAa -5'
6757 3' -52.9 NC_001875.2 + 3056 0.69 0.83785
Target:  5'- cGUAAGAgGCGCGcAGCGGcGCgCCGg- -3'
miRNA:   3'- aCGUUUUgCGCGUuUUGCC-CG-GGCaa -5'
6757 3' -52.9 NC_001875.2 + 59908 0.69 0.83785
Target:  5'- cGCGGAGCGCGCGGucaaGGcGCUCGc- -3'
miRNA:   3'- aCGUUUUGCGCGUUuug-CC-CGGGCaa -5'
6757 3' -52.9 NC_001875.2 + 51567 0.69 0.846337
Target:  5'- gUGCGAgccguucacGACGCGCG--GCGuGGCCaCGUUu -3'
miRNA:   3'- -ACGUU---------UUGCGCGUuuUGC-CCGG-GCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.