Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6757 | 5' | -58.9 | NC_001875.2 | + | 43021 | 0.73 | 0.334532 |
Target: 5'- ---uGCGAGUGCCgCGCGCcgcggcgcGCGGGCUa -3' miRNA: 3'- aauuCGUUCGCGG-GCGCGa-------CGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 46158 | 0.73 | 0.334532 |
Target: 5'- ---cGCAAGCuGgUCGaguCGCUGCAGGCCg -3' miRNA: 3'- aauuCGUUCG-CgGGC---GCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 38174 | 0.73 | 0.334532 |
Target: 5'- ---cGCGAGCGCCCGac--GCAGGUCg -3' miRNA: 3'- aauuCGUUCGCGGGCgcgaCGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 88031 | 0.72 | 0.350055 |
Target: 5'- ---cGCAAaCGCCCGCGCaGCAGccaaGCCa -3' miRNA: 3'- aauuCGUUcGCGGGCGCGaCGUC----CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 994 | 0.72 | 0.350055 |
Target: 5'- --cAGCAAaCGCCauUGCUGCGGGCCc -3' miRNA: 3'- aauUCGUUcGCGGgcGCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 88085 | 0.72 | 0.350055 |
Target: 5'- ---cGCAAaCGCCCGCGCaGCAGccaaGCCa -3' miRNA: 3'- aauuCGUUcGCGGGCGCGaCGUC----CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 121170 | 0.72 | 0.350055 |
Target: 5'- --cGGC-AGCGCCUGCGCcaagUGCAGuccGCCg -3' miRNA: 3'- aauUCGuUCGCGGGCGCG----ACGUC---CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 128703 | 0.72 | 0.350055 |
Target: 5'- ---cGCc-GCGUCCGCGCaGCGGGCUu -3' miRNA: 3'- aauuCGuuCGCGGGCGCGaCGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 98629 | 0.72 | 0.350055 |
Target: 5'- -cGAGCccGCGCCCGCGuUUGCcGGCa -3' miRNA: 3'- aaUUCGuuCGCGGGCGC-GACGuCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 122251 | 0.72 | 0.350055 |
Target: 5'- ---uGCAcGCGCCCacCGCUaaccGCAGGCCa -3' miRNA: 3'- aauuCGUuCGCGGGc-GCGA----CGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 127272 | 0.72 | 0.366084 |
Target: 5'- -cGGGCAugcGGCuGCUCGCGUUGCuggcGGCCc -3' miRNA: 3'- aaUUCGU---UCG-CGGGCGCGACGu---CCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 117171 | 0.72 | 0.374286 |
Target: 5'- ---cGCAAGCGUauuccaguUUGUgGCUGCAGGCCg -3' miRNA: 3'- aauuCGUUCGCG--------GGCG-CGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 66101 | 0.71 | 0.382612 |
Target: 5'- ---cGcCGAG-GCCCGCGCgGCGGGCg -3' miRNA: 3'- aauuC-GUUCgCGGGCGCGaCGUCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 91118 | 0.71 | 0.398766 |
Target: 5'- --cAGC-AGCGUCUGCGCguccuugacguacUGCAGGCUu -3' miRNA: 3'- aauUCGuUCGCGGGCGCG-------------ACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 87841 | 0.71 | 0.399629 |
Target: 5'- cUGGGCAcGGCGCCCGUcggGCUGUccguGGCg -3' miRNA: 3'- aAUUCGU-UCGCGGGCG---CGACGu---CCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 35060 | 0.71 | 0.399629 |
Target: 5'- --cAGgAGGUGCCCGUGCUGguuugcGGCCg -3' miRNA: 3'- aauUCgUUCGCGGGCGCGACgu----CCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 17062 | 0.71 | 0.407442 |
Target: 5'- -cGAGC-AGCuGCCCGCuggugaaGCUGguCAGGCCg -3' miRNA: 3'- aaUUCGuUCG-CGGGCG-------CGAC--GUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 66030 | 0.71 | 0.408316 |
Target: 5'- ---uGCAAGCGCuuGgCGCcgcGCAGGCa -3' miRNA: 3'- aauuCGUUCGCGggC-GCGa--CGUCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 89030 | 0.71 | 0.416236 |
Target: 5'- ---cGCAAGUugucauucagcguGCCCGUGC-GCGGGCUg -3' miRNA: 3'- aauuCGUUCG-------------CGGGCGCGaCGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 43306 | 0.71 | 0.417121 |
Target: 5'- aUGGGguAGCGgCgCGCGC-GCGGGUCg -3' miRNA: 3'- aAUUCguUCGCgG-GCGCGaCGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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