miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 100970 1.09 0.000901
Target:  5'- uUAAGCAAGCGCCCGCGCUGCAGGCCg -3'
miRNA:   3'- aAUUCGUUCGCGGGCGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 62419 0.84 0.058213
Target:  5'- gUGGGCAAGCGUuuGCGCUGCGccGGCUg -3'
miRNA:   3'- aAUUCGUUCGCGggCGCGACGU--CCGG- -5'
6757 5' -58.9 NC_001875.2 + 30933 0.79 0.137334
Target:  5'- --cGGCGAGCGUCuccgCGCGCUGCGGcGCCc -3'
miRNA:   3'- aauUCGUUCGCGG----GCGCGACGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 39324 0.79 0.137334
Target:  5'- --cGGCGGcGUGCgCGCGCUGCAGGCg -3'
miRNA:   3'- aauUCGUU-CGCGgGCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 111971 0.77 0.164669
Target:  5'- ---cGCAaacGGCGCCCGCGCcGCGacgcGGCCg -3'
miRNA:   3'- aauuCGU---UCGCGGGCGCGaCGU----CCGG- -5'
6757 5' -58.9 NC_001875.2 + 75488 0.77 0.177818
Target:  5'- -cGGGCAugucGCGCCUGCGUcGCAGGCg -3'
miRNA:   3'- aaUUCGUu---CGCGGGCGCGaCGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 19704 0.77 0.177818
Target:  5'- -gAAGCgAGGUGUaCGCGCUGUGGGCCg -3'
miRNA:   3'- aaUUCG-UUCGCGgGCGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 131388 0.77 0.182404
Target:  5'- gUGAGCAGGUcaCCGCGCUGCAGaCCa -3'
miRNA:   3'- aAUUCGUUCGcgGGCGCGACGUCcGG- -5'
6757 5' -58.9 NC_001875.2 + 459 0.77 0.182404
Target:  5'- --cGGCGAGUGUUCGCGCuUGCacAGGCCg -3'
miRNA:   3'- aauUCGUUCGCGGGCGCG-ACG--UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 59280 0.75 0.228562
Target:  5'- --cAGCGcccGCGCCCGCGCccGCAGcGCCc -3'
miRNA:   3'- aauUCGUu--CGCGGGCGCGa-CGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 72569 0.75 0.23426
Target:  5'- ---cGCGGGCGCggGCGCUGCGGGUg -3'
miRNA:   3'- aauuCGUUCGCGggCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 96367 0.75 0.23426
Target:  5'- ---uGCuGGCGCacaUGCGCUGCAGGUCc -3'
miRNA:   3'- aauuCGuUCGCGg--GCGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 118317 0.74 0.264558
Target:  5'- -gAGGC-GGCcgGCCgCGCGCUGCAGGUg -3'
miRNA:   3'- aaUUCGuUCG--CGG-GCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 120844 0.74 0.280195
Target:  5'- aUGGGCAcgcGCGCCUGCaGCgcuucgucgcuugacUGCAGGCCc -3'
miRNA:   3'- aAUUCGUu--CGCGGGCG-CG---------------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 98758 0.73 0.305016
Target:  5'- --cGGCAAGUGCCCGaCGUgccgGCAagacguGGCCg -3'
miRNA:   3'- aauUCGUUCGCGGGC-GCGa---CGU------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 78387 0.73 0.305016
Target:  5'- -cAAGcCGAGCGaCCCGCaguGCUGCAcgcgcuGGCCg -3'
miRNA:   3'- aaUUC-GUUCGC-GGGCG---CGACGU------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 104472 0.73 0.312203
Target:  5'- --cAGCGGGCGCaaCGUGCUGguGaGCCg -3'
miRNA:   3'- aauUCGUUCGCGg-GCGCGACguC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 94784 0.73 0.319518
Target:  5'- --cAGCGuggccGCGUCCGCGCgcgUGCAGcGCCg -3'
miRNA:   3'- aauUCGUu----CGCGGGCGCG---ACGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 99918 0.73 0.326961
Target:  5'- -cGAGCGGGcCGCgCGCGCggUGCAgcgcGGCCa -3'
miRNA:   3'- aaUUCGUUC-GCGgGCGCG--ACGU----CCGG- -5'
6757 5' -58.9 NC_001875.2 + 72240 0.73 0.326961
Target:  5'- ---cGCcaAAGCGCCCGUGCUcGCGcacgucGGCCa -3'
miRNA:   3'- aauuCG--UUCGCGGGCGCGA-CGU------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.