miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 43116 0.66 0.684895
Target:  5'- --cGGCAGGUuggaGCcgCCGCGCauccacUGCAGGCUu -3'
miRNA:   3'- aauUCGUUCG----CG--GGCGCG------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 8853 0.66 0.705295
Target:  5'- --cAGCuGGCGCaCGUGUUGCcGGUCa -3'
miRNA:   3'- aauUCGuUCGCGgGCGCGACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 36421 0.66 0.674623
Target:  5'- --uGGCcGGCG-CCGCGgUGuCGGGCUg -3'
miRNA:   3'- aauUCGuUCGCgGGCGCgAC-GUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 45459 0.66 0.673594
Target:  5'- --cGGCGcucGGCGCCCGCagccgcgcgucuaGC-GCGGuGCCa -3'
miRNA:   3'- aauUCGU---UCGCGGGCG-------------CGaCGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 5847 0.66 0.705295
Target:  5'- -------cGCGCCCGCGUaGCAGuGCa -3'
miRNA:   3'- aauucguuCGCGGGCGCGaCGUC-CGg -5'
6757 5' -58.9 NC_001875.2 + 10153 0.66 0.695122
Target:  5'- ---cGCAAGCG-CgGCG-UGguGGCCg -3'
miRNA:   3'- aauuCGUUCGCgGgCGCgACguCCGG- -5'
6757 5' -58.9 NC_001875.2 + 98807 0.66 0.684895
Target:  5'- --cGGCGcGGCGCCCgccGCGCUGCgcuuaaggGGGUUc -3'
miRNA:   3'- aauUCGU-UCGCGGG---CGCGACG--------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 18568 0.66 0.692059
Target:  5'- cUUGAGCGcgcuuugcgucguuGGCGCCUauuGCGCguuCAGGCg -3'
miRNA:   3'- -AAUUCGU--------------UCGCGGG---CGCGac-GUCCGg -5'
6757 5' -58.9 NC_001875.2 + 117322 0.66 0.674623
Target:  5'- gUUGAGCGgcuugacacGGCG-CgGCGCgggcgaaccgGCGGGCCg -3'
miRNA:   3'- -AAUUCGU---------UCGCgGgCGCGa---------CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 45139 0.66 0.695122
Target:  5'- --uAGCGGGCGCCaCuuGCcGCuacuGGCCa -3'
miRNA:   3'- aauUCGUUCGCGG-GcgCGaCGu---CCGG- -5'
6757 5' -58.9 NC_001875.2 + 102993 0.66 0.715404
Target:  5'- --cGGCGacaAGUGCCCGcCGUccgUGUcGGCCa -3'
miRNA:   3'- aauUCGU---UCGCGGGC-GCG---ACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 4469 0.66 0.674623
Target:  5'- cUGAGCGc-CGUCCGCGCaUGCuuucAGGCa -3'
miRNA:   3'- aAUUCGUucGCGGGCGCG-ACG----UCCGg -5'
6757 5' -58.9 NC_001875.2 + 53442 0.66 0.684895
Target:  5'- --cGGCcAGCGCgUGCagcaCUGCGGGUCg -3'
miRNA:   3'- aauUCGuUCGCGgGCGc---GACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 125031 0.66 0.705295
Target:  5'- --cGGCGcagcugguucAGCGaCCCGauCUGCGGGUCg -3'
miRNA:   3'- aauUCGU----------UCGC-GGGCgcGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 128772 0.66 0.695122
Target:  5'- gUGGGCGaccccGGCGCgC-CGCUGCGcGCCu -3'
miRNA:   3'- aAUUCGU-----UCGCGgGcGCGACGUcCGG- -5'
6757 5' -58.9 NC_001875.2 + 61517 0.66 0.705295
Target:  5'- ---cGCAGuccgcGUGCUCGCGCUugGC-GGCCa -3'
miRNA:   3'- aauuCGUU-----CGCGGGCGCGA--CGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 95405 0.66 0.673594
Target:  5'- ---cGCAGcGCGCCgGCGUcGCaaagguaAGGCCu -3'
miRNA:   3'- aauuCGUU-CGCGGgCGCGaCG-------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 108569 0.66 0.695122
Target:  5'- --cGGCGcggcGGUGCUgGCGCUGCGcuGCCc -3'
miRNA:   3'- aauUCGU----UCGCGGgCGCGACGUc-CGG- -5'
6757 5' -58.9 NC_001875.2 + 58753 0.66 0.725441
Target:  5'- ---cGCAAGCguacuGCUCGCGCgu--GGCCa -3'
miRNA:   3'- aauuCGUUCG-----CGGGCGCGacguCCGG- -5'
6757 5' -58.9 NC_001875.2 + 59249 0.66 0.674623
Target:  5'- -cGAGCGcgaAGCGUacgaGCGCaauuUGCGGGCUa -3'
miRNA:   3'- aaUUCGU---UCGCGgg--CGCG----ACGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.