miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 87993 0.71 0.417121
Target:  5'- ---cGCGA-CGCCCGCGCaGCAGccaaGCCa -3'
miRNA:   3'- aauuCGUUcGCGGGCGCGaCGUC----CGG- -5'
6757 5' -58.9 NC_001875.2 + 88085 0.72 0.350055
Target:  5'- ---cGCAAaCGCCCGCGCaGCAGccaaGCCa -3'
miRNA:   3'- aauuCGUUcGCGGGCGCGaCGUC----CGG- -5'
6757 5' -58.9 NC_001875.2 + 122251 0.72 0.350055
Target:  5'- ---uGCAcGCGCCCacCGCUaaccGCAGGCCa -3'
miRNA:   3'- aauuCGUuCGCGGGc-GCGA----CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 128703 0.72 0.350055
Target:  5'- ---cGCc-GCGUCCGCGCaGCGGGCUu -3'
miRNA:   3'- aauuCGuuCGCGGGCGCGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 117171 0.72 0.374286
Target:  5'- ---cGCAAGCGUauuccaguUUGUgGCUGCAGGCCg -3'
miRNA:   3'- aauuCGUUCGCG--------GGCG-CGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 91118 0.71 0.398766
Target:  5'- --cAGC-AGCGUCUGCGCguccuugacguacUGCAGGCUu -3'
miRNA:   3'- aauUCGuUCGCGGGCGCG-------------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 35060 0.71 0.399629
Target:  5'- --cAGgAGGUGCCCGUGCUGguuugcGGCCg -3'
miRNA:   3'- aauUCgUUCGCGGGCGCGACgu----CCGG- -5'
6757 5' -58.9 NC_001875.2 + 17062 0.71 0.407442
Target:  5'- -cGAGC-AGCuGCCCGCuggugaaGCUGguCAGGCCg -3'
miRNA:   3'- aaUUCGuUCG-CGGGCG-------CGAC--GUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 66030 0.71 0.408316
Target:  5'- ---uGCAAGCGCuuGgCGCcgcGCAGGCa -3'
miRNA:   3'- aauuCGUUCGCGggC-GCGa--CGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 88031 0.72 0.350055
Target:  5'- ---cGCAAaCGCCCGCGCaGCAGccaaGCCa -3'
miRNA:   3'- aauuCGUUcGCGGGCGCGaCGUC----CGG- -5'
6757 5' -58.9 NC_001875.2 + 994 0.72 0.350055
Target:  5'- --cAGCAAaCGCCauUGCUGCGGGCCc -3'
miRNA:   3'- aauUCGUUcGCGGgcGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 43021 0.73 0.334532
Target:  5'- ---uGCGAGUGCCgCGCGCcgcggcgcGCGGGCUa -3'
miRNA:   3'- aauuCGUUCGCGG-GCGCGa-------CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 39324 0.79 0.137334
Target:  5'- --cGGCGGcGUGCgCGCGCUGCAGGCg -3'
miRNA:   3'- aauUCGUU-CGCGgGCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 111971 0.77 0.164669
Target:  5'- ---cGCAaacGGCGCCCGCGCcGCGacgcGGCCg -3'
miRNA:   3'- aauuCGU---UCGCGGGCGCGaCGU----CCGG- -5'
6757 5' -58.9 NC_001875.2 + 19704 0.77 0.177818
Target:  5'- -gAAGCgAGGUGUaCGCGCUGUGGGCCg -3'
miRNA:   3'- aaUUCG-UUCGCGgGCGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 459 0.77 0.182404
Target:  5'- --cGGCGAGUGUUCGCGCuUGCacAGGCCg -3'
miRNA:   3'- aauUCGUUCGCGGGCGCG-ACG--UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 131388 0.77 0.182404
Target:  5'- gUGAGCAGGUcaCCGCGCUGCAGaCCa -3'
miRNA:   3'- aAUUCGUUCGcgGGCGCGACGUCcGG- -5'
6757 5' -58.9 NC_001875.2 + 72569 0.75 0.23426
Target:  5'- ---cGCGGGCGCggGCGCUGCGGGUg -3'
miRNA:   3'- aauuCGUUCGCGggCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 118317 0.74 0.264558
Target:  5'- -gAGGC-GGCcgGCCgCGCGCUGCAGGUg -3'
miRNA:   3'- aaUUCGuUCG--CGG-GCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 72240 0.73 0.326961
Target:  5'- ---cGCcaAAGCGCCCGUGCUcGCGcacgucGGCCa -3'
miRNA:   3'- aauuCG--UUCGCGGGCGCGA-CGU------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.