miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 459 0.77 0.182404
Target:  5'- --cGGCGAGUGUUCGCGCuUGCacAGGCCg -3'
miRNA:   3'- aauUCGUUCGCGGGCGCG-ACG--UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 994 0.72 0.350055
Target:  5'- --cAGCAAaCGCCauUGCUGCGGGCCc -3'
miRNA:   3'- aauUCGUUcGCGGgcGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 1056 0.68 0.549987
Target:  5'- gUUGGGCGcaacguuGGCGaCCGCGCgGuCAGGCUc -3'
miRNA:   3'- -AAUUCGU-------UCGCgGGCGCGaC-GUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 2254 0.71 0.417121
Target:  5'- --cAGCAAcUGgCUGuCGCUGCGGGCCa -3'
miRNA:   3'- aauUCGUUcGCgGGC-GCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 2812 0.66 0.695122
Target:  5'- --uGGCGAGCGCgaGCGCgGCGacguuGGCg -3'
miRNA:   3'- aauUCGUUCGCGggCGCGaCGU-----CCGg -5'
6757 5' -58.9 NC_001875.2 + 3178 0.67 0.663284
Target:  5'- gUGAGCcGGCGgCCGCGCaccagagacagguUGC-GGCg -3'
miRNA:   3'- aAUUCGuUCGCgGGCGCG-------------ACGuCCGg -5'
6757 5' -58.9 NC_001875.2 + 3868 0.66 0.705295
Target:  5'- --uGGCAcGGCaGCaCCGCGCcgccaagcuggGCAGGCUg -3'
miRNA:   3'- aauUCGU-UCG-CG-GGCGCGa----------CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 4469 0.66 0.674623
Target:  5'- cUGAGCGc-CGUCCGCGCaUGCuuucAGGCa -3'
miRNA:   3'- aAUUCGUucGCGGGCGCG-ACG----UCCGg -5'
6757 5' -58.9 NC_001875.2 + 4523 0.66 0.725441
Target:  5'- -aAAGC-GGCGCaCCGCcgGCUGCGGuuCCu -3'
miRNA:   3'- aaUUCGuUCGCG-GGCG--CGACGUCc-GG- -5'
6757 5' -58.9 NC_001875.2 + 5847 0.66 0.705295
Target:  5'- -------cGCGCCCGCGUaGCAGuGCa -3'
miRNA:   3'- aauucguuCGCGGGCGCGaCGUC-CGg -5'
6757 5' -58.9 NC_001875.2 + 6981 0.68 0.591896
Target:  5'- -aGGGCGcaaAGCGgCCgguguggguGUGCUGCuGGCCg -3'
miRNA:   3'- aaUUCGU---UCGCgGG---------CGCGACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 7031 0.71 0.417121
Target:  5'- gUAAGCGAGgugGCCgCGCGCuUGUcGGCCu -3'
miRNA:   3'- aAUUCGUUCg--CGG-GCGCG-ACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 7437 0.67 0.664316
Target:  5'- -aGGGCAAcugcGCGCCgGCGaUUGCGgcgguguacGGCCg -3'
miRNA:   3'- aaUUCGUU----CGCGGgCGC-GACGU---------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 8071 0.7 0.435073
Target:  5'- cUUGAGC--GCGUCCGCGUUGUugucgcgacGGCCg -3'
miRNA:   3'- -AAUUCGuuCGCGGGCGCGACGu--------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 8853 0.66 0.705295
Target:  5'- --cAGCuGGCGCaCGUGUUGCcGGUCa -3'
miRNA:   3'- aauUCGuUCGCGgGCGCGACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 9861 0.68 0.58572
Target:  5'- -cGGGCAAcGUGCCCGCcagcuuuuugaauacGCUGCAacgcuGCCg -3'
miRNA:   3'- aaUUCGUU-CGCGGGCG---------------CGACGUc----CGG- -5'
6757 5' -58.9 NC_001875.2 + 10153 0.66 0.695122
Target:  5'- ---cGCAAGCG-CgGCG-UGguGGCCg -3'
miRNA:   3'- aauuCGUUCGCgGgCGCgACguCCGG- -5'
6757 5' -58.9 NC_001875.2 + 10983 0.7 0.444215
Target:  5'- --cAGuCAAGCGacgaaGCGCUGCAGGCg -3'
miRNA:   3'- aauUC-GUUCGCggg--CGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 11919 0.68 0.602213
Target:  5'- -cGAGCAGGUGUUuugCGCGCgGCGcGCCg -3'
miRNA:   3'- aaUUCGUUCGCGG---GCGCGaCGUcCGG- -5'
6757 5' -58.9 NC_001875.2 + 12405 0.67 0.653982
Target:  5'- -cGGGCcgcuGUuuGCCgCGCGCcaaGCAGGCCg -3'
miRNA:   3'- aaUUCGuu--CG--CGG-GCGCGa--CGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.