miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 131388 0.77 0.182404
Target:  5'- gUGAGCAGGUcaCCGCGCUGCAGaCCa -3'
miRNA:   3'- aAUUCGUUCGcgGGCGCGACGUCcGG- -5'
6757 5' -58.9 NC_001875.2 + 130820 0.69 0.491461
Target:  5'- -cGGGCcc-CGCCaCGCGCUGCaagaacGGGCCc -3'
miRNA:   3'- aaUUCGuucGCGG-GCGCGACG------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 128900 0.68 0.550999
Target:  5'- -cGAGCAAGCGCgCCaGCGCgcgGUgaauuugcacgAGGCg -3'
miRNA:   3'- aaUUCGUUCGCG-GG-CGCGa--CG-----------UCCGg -5'
6757 5' -58.9 NC_001875.2 + 128772 0.66 0.695122
Target:  5'- gUGGGCGaccccGGCGCgC-CGCUGCGcGCCu -3'
miRNA:   3'- aAUUCGU-----UCGCGgGcGCGACGUcCGG- -5'
6757 5' -58.9 NC_001875.2 + 128745 0.69 0.511005
Target:  5'- -cGAGCc-GCGCCCcgGCGCgUGCAcGCCg -3'
miRNA:   3'- aaUUCGuuCGCGGG--CGCG-ACGUcCGG- -5'
6757 5' -58.9 NC_001875.2 + 128703 0.72 0.350055
Target:  5'- ---cGCc-GCGUCCGCGCaGCGGGCUu -3'
miRNA:   3'- aauuCGuuCGCGGGCGCGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 128006 0.66 0.695122
Target:  5'- -gAGGCu-GCGgCCGCGCcgGCGugcgccgacgacGGCCg -3'
miRNA:   3'- aaUUCGuuCGCgGGCGCGa-CGU------------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 127272 0.72 0.366084
Target:  5'- -cGGGCAugcGGCuGCUCGCGUUGCuggcGGCCc -3'
miRNA:   3'- aaUUCGU---UCG-CGGGCGCGACGu---CCGG- -5'
6757 5' -58.9 NC_001875.2 + 125031 0.66 0.705295
Target:  5'- --cGGCGcagcugguucAGCGaCCCGauCUGCGGGUCg -3'
miRNA:   3'- aauUCGU----------UCGC-GGGCgcGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 124734 0.66 0.695122
Target:  5'- --uGGCGgucaaugucGGCaGCgCGCGCUGCaugucugcgcacAGGCCg -3'
miRNA:   3'- aauUCGU---------UCG-CGgGCGCGACG------------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 124579 0.69 0.501192
Target:  5'- ---cGUcGGCGaCCCGCGC--CAGGCCg -3'
miRNA:   3'- aauuCGuUCGC-GGGCGCGacGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 124201 0.68 0.58161
Target:  5'- -aGAGCGcgucGGCGUgUGUGC-GCAGGUCg -3'
miRNA:   3'- aaUUCGU----UCGCGgGCGCGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 123531 0.67 0.653982
Target:  5'- -aGGGCGuGCaCCCaaccCGCUGCuGGCCg -3'
miRNA:   3'- aaUUCGUuCGcGGGc---GCGACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 122251 0.72 0.350055
Target:  5'- ---uGCAcGCGCCCacCGCUaaccGCAGGCCa -3'
miRNA:   3'- aauuCGUuCGCGGGc-GCGA----CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 121371 0.69 0.540901
Target:  5'- --cAGCAAGCGCCauucacugagCGCGCcGCcGcGCCg -3'
miRNA:   3'- aauUCGUUCGCGG----------GCGCGaCGuC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 121170 0.72 0.350055
Target:  5'- --cGGC-AGCGCCUGCGCcaagUGCAGuccGCCg -3'
miRNA:   3'- aauUCGuUCGCGGGCGCG----ACGUC---CGG- -5'
6757 5' -58.9 NC_001875.2 + 120844 0.74 0.280195
Target:  5'- aUGGGCAcgcGCGCCUGCaGCgcuucgucgcuugacUGCAGGCCc -3'
miRNA:   3'- aAUUCGUu--CGCGGGCG-CG---------------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 118317 0.74 0.264558
Target:  5'- -gAGGC-GGCcgGCCgCGCGCUGCAGGUg -3'
miRNA:   3'- aaUUCGuUCG--CGG-GCGCGACGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 117322 0.66 0.674623
Target:  5'- gUUGAGCGgcuugacacGGCG-CgGCGCgggcgaaccgGCGGGCCg -3'
miRNA:   3'- -AAUUCGU---------UCGCgGgCGCGa---------CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 117171 0.72 0.374286
Target:  5'- ---cGCAAGCGUauuccaguUUGUgGCUGCAGGCCg -3'
miRNA:   3'- aauuCGUUCGCG--------GGCG-CGACGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.