miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 12969 0.71 0.417121
Target:  5'- --cGGCGGGCGUgggcuCCGCGCcgUGguGGCUa -3'
miRNA:   3'- aauUCGUUCGCG-----GGCGCG--ACguCCGG- -5'
6757 5' -58.9 NC_001875.2 + 13547 0.67 0.622908
Target:  5'- ---uGCAAGCGCgCCa-GCUGCAG-CCa -3'
miRNA:   3'- aauuCGUUCGCG-GGcgCGACGUCcGG- -5'
6757 5' -58.9 NC_001875.2 + 17062 0.71 0.407442
Target:  5'- -cGAGC-AGCuGCCCGCuggugaaGCUGguCAGGCCg -3'
miRNA:   3'- aaUUCGuUCG-CGGGCG-------CGAC--GUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 17095 0.67 0.653982
Target:  5'- -cGGGCAAGC-CgCGCGCcacugGC-GGCCg -3'
miRNA:   3'- aaUUCGUUCGcGgGCGCGa----CGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 17971 0.68 0.602213
Target:  5'- aUGGGCGuggacgacGUGCCCGCGUucaacgUGC-GGCCc -3'
miRNA:   3'- aAUUCGUu-------CGCGGGCGCG------ACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 18568 0.66 0.692059
Target:  5'- cUUGAGCGcgcuuugcgucguuGGCGCCUauuGCGCguuCAGGCg -3'
miRNA:   3'- -AAUUCGU--------------UCGCGGG---CGCGac-GUCCGg -5'
6757 5' -58.9 NC_001875.2 + 19704 0.77 0.177818
Target:  5'- -gAAGCgAGGUGUaCGCGCUGUGGGCCg -3'
miRNA:   3'- aaUUCG-UUCGCGgGCGCGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 19967 0.67 0.643631
Target:  5'- --cGGCcGGCGCCuCGcCGUUGCugacgugcguGGCCa -3'
miRNA:   3'- aauUCGuUCGCGG-GC-GCGACGu---------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 21251 0.69 0.540901
Target:  5'- -gAAGCugguccAGGCGCgCGCGCgGCGcGGCUa -3'
miRNA:   3'- aaUUCG------UUCGCGgGCGCGaCGU-CCGG- -5'
6757 5' -58.9 NC_001875.2 + 21557 0.69 0.511005
Target:  5'- --cGGCGacggGGCaGCCCGCGCgcuccGC-GGCCa -3'
miRNA:   3'- aauUCGU----UCG-CGGGCGCGa----CGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 23085 0.67 0.664316
Target:  5'- --cGGCAAcccGCGCCgCGUgcaGCUGCcccgccaaAGGCCg -3'
miRNA:   3'- aauUCGUU---CGCGG-GCG---CGACG--------UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 23170 0.67 0.664316
Target:  5'- -cGGGCAcGGCGgCUGCGg-GCAcGGCCg -3'
miRNA:   3'- aaUUCGU-UCGCgGGCGCgaCGU-CCGG- -5'
6757 5' -58.9 NC_001875.2 + 23577 0.66 0.715404
Target:  5'- -cGAGCGcGgGCaCCGCG-UGCuuGGCCa -3'
miRNA:   3'- aaUUCGUuCgCG-GGCGCgACGu-CCGG- -5'
6757 5' -58.9 NC_001875.2 + 23642 0.68 0.561154
Target:  5'- cUGAGCGGGUGCUCGC-CgagGCccAGGUCa -3'
miRNA:   3'- aAUUCGUUCGCGGGCGcGa--CG--UCCGG- -5'
6757 5' -58.9 NC_001875.2 + 24010 0.68 0.561154
Target:  5'- ---cGCAAgGCGCaCCGgGC-GCGGGCUc -3'
miRNA:   3'- aauuCGUU-CGCG-GGCgCGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 29082 0.71 0.417121
Target:  5'- -gAAGCGcugcAGCGCUCGUGCaa-AGGCCg -3'
miRNA:   3'- aaUUCGU----UCGCGGGCGCGacgUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 30298 0.66 0.715404
Target:  5'- ---cGCAAcGCGUCCGUggccGCgUGCAGGUUa -3'
miRNA:   3'- aauuCGUU-CGCGGGCG----CG-ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 30933 0.79 0.137334
Target:  5'- --cGGCGAGCGUCuccgCGCGCUGCGGcGCCc -3'
miRNA:   3'- aauUCGUUCGCGG----GCGCGACGUC-CGG- -5'
6757 5' -58.9 NC_001875.2 + 31915 0.68 0.57136
Target:  5'- --uGGCc-GCGCugcaCCGCGC-GCGGGCCc -3'
miRNA:   3'- aauUCGuuCGCG----GGCGCGaCGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 32792 0.7 0.444215
Target:  5'- gUGGGCGGGCG-CCGCGCcgGCAaGCUc -3'
miRNA:   3'- aAUUCGUUCGCgGGCGCGa-CGUcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.