Results 1 - 20 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6757 | 5' | -58.9 | NC_001875.2 | + | 100970 | 1.09 | 0.000901 |
Target: 5'- uUAAGCAAGCGCCCGCGCUGCAGGCCg -3' miRNA: 3'- aAUUCGUUCGCGGGCGCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 87841 | 0.71 | 0.399629 |
Target: 5'- cUGGGCAcGGCGCCCGUcggGCUGUccguGGCg -3' miRNA: 3'- aAUUCGU-UCGCGGGCG---CGACGu---CCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 2254 | 0.71 | 0.417121 |
Target: 5'- --cAGCAAcUGgCUGuCGCUGCGGGCCa -3' miRNA: 3'- aauUCGUUcGCgGGC-GCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 58753 | 0.66 | 0.725441 |
Target: 5'- ---cGCAAGCguacuGCUCGCGCgu--GGCCa -3' miRNA: 3'- aauuCGUUCG-----CGGGCGCGacguCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 96367 | 0.75 | 0.23426 |
Target: 5'- ---uGCuGGCGCacaUGCGCUGCAGGUCc -3' miRNA: 3'- aauuCGuUCGCGg--GCGCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 120844 | 0.74 | 0.280195 |
Target: 5'- aUGGGCAcgcGCGCCUGCaGCgcuucgucgcuugacUGCAGGCCc -3' miRNA: 3'- aAUUCGUu--CGCGGGCG-CG---------------ACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 98758 | 0.73 | 0.305016 |
Target: 5'- --cGGCAAGUGCCCGaCGUgccgGCAagacguGGCCg -3' miRNA: 3'- aauUCGUUCGCGGGC-GCGa---CGU------CCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 104472 | 0.73 | 0.312203 |
Target: 5'- --cAGCGGGCGCaaCGUGCUGguGaGCCg -3' miRNA: 3'- aauUCGUUCGCGg-GCGCGACguC-CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 46158 | 0.73 | 0.334532 |
Target: 5'- ---cGCAAGCuGgUCGaguCGCUGCAGGCCg -3' miRNA: 3'- aauuCGUUCG-CgGGC---GCGACGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 66101 | 0.71 | 0.382612 |
Target: 5'- ---cGcCGAG-GCCCGCGCgGCGGGCg -3' miRNA: 3'- aauuC-GUUCgCGGGCGCGaCGUCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 121170 | 0.72 | 0.350055 |
Target: 5'- --cGGC-AGCGCCUGCGCcaagUGCAGuccGCCg -3' miRNA: 3'- aauUCGuUCGCGGGCGCG----ACGUC---CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 99918 | 0.73 | 0.326961 |
Target: 5'- -cGAGCGGGcCGCgCGCGCggUGCAgcgcGGCCa -3' miRNA: 3'- aaUUCGUUC-GCGgGCGCG--ACGU----CCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 30933 | 0.79 | 0.137334 |
Target: 5'- --cGGCGAGCGUCuccgCGCGCUGCGGcGCCc -3' miRNA: 3'- aauUCGUUCGCGG----GCGCGACGUC-CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 98629 | 0.72 | 0.350055 |
Target: 5'- -cGAGCccGCGCCCGCGuUUGCcGGCa -3' miRNA: 3'- aaUUCGuuCGCGGGCGC-GACGuCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 75488 | 0.77 | 0.177818 |
Target: 5'- -cGGGCAugucGCGCCUGCGUcGCAGGCg -3' miRNA: 3'- aaUUCGUu---CGCGGGCGCGaCGUCCGg -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 94784 | 0.73 | 0.319518 |
Target: 5'- --cAGCGuggccGCGUCCGCGCgcgUGCAGcGCCg -3' miRNA: 3'- aauUCGUu----CGCGGGCGCG---ACGUC-CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 127272 | 0.72 | 0.366084 |
Target: 5'- -cGGGCAugcGGCuGCUCGCGUUGCuggcGGCCc -3' miRNA: 3'- aaUUCGU---UCG-CGGGCGCGACGu---CCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 89030 | 0.71 | 0.416236 |
Target: 5'- ---cGCAAGUugucauucagcguGCCCGUGC-GCGGGCUg -3' miRNA: 3'- aauuCGUUCG-------------CGGGCGCGaCGUCCGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 59280 | 0.75 | 0.228562 |
Target: 5'- --cAGCGcccGCGCCCGCGCccGCAGcGCCc -3' miRNA: 3'- aauUCGUu--CGCGGGCGCGa-CGUC-CGG- -5' |
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6757 | 5' | -58.9 | NC_001875.2 | + | 78387 | 0.73 | 0.305016 |
Target: 5'- -cAAGcCGAGCGaCCCGCaguGCUGCAcgcgcuGGCCg -3' miRNA: 3'- aaUUC-GUUCGC-GGGCG---CGACGU------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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