miRNA display CGI


Results 21 - 40 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 30959 0.74 0.094202
Target:  5'- cAUGGCGCCCacGCGcGCgCUGCGCCuCGCg -3'
miRNA:   3'- -UGCCGCGGGc-CGCuCG-GGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 126320 0.74 0.094202
Target:  5'- aACGGCGgCCGGCGuaaacuGCgCGCGUgCGCc -3'
miRNA:   3'- -UGCCGCgGGCCGCu-----CGgGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 102578 0.74 0.096534
Target:  5'- cCGGCGCggUCGGCG-GCCgCGCaCCCGCa -3'
miRNA:   3'- uGCCGCG--GGCCGCuCGG-GCGcGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 107818 0.74 0.096534
Target:  5'- cAC-GCGaCCGcCGAGCCCGCGCCCGg -3'
miRNA:   3'- -UGcCGCgGGCcGCUCGGGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 38769 0.74 0.096534
Target:  5'- uCGGCGUCCuguugGGCgGAGagCGCGCCCGCa -3'
miRNA:   3'- uGCCGCGGG-----CCG-CUCggGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 41466 0.74 0.096534
Target:  5'- uGCGGCGCgCgCGGCGugucuuguguGGUCUGCGCCgGCc -3'
miRNA:   3'- -UGCCGCG-G-GCCGC----------UCGGGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 71917 0.74 0.098679
Target:  5'- gGCGuGCGCgUCGGCGAGCgccuugaCCGCGCgcuCCGCg -3'
miRNA:   3'- -UGC-CGCG-GGCCGCUCG-------GGCGCG---GGCG- -5'
6758 3' -68.8 NC_001875.2 + 65805 0.74 0.09892
Target:  5'- cGCGGUGCCUGcGCGGcGCCaaGCGCuuGCa -3'
miRNA:   3'- -UGCCGCGGGC-CGCU-CGGg-CGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 131511 0.74 0.09989
Target:  5'- uGCGGCGCgCGGUGcagcGGCUggaagcggcgcaaagCGCGCCCGUg -3'
miRNA:   3'- -UGCCGCGgGCCGC----UCGG---------------GCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 25918 0.74 0.101362
Target:  5'- aGCGGCcaauGCCCgaguuuuucguGGUG-GCgCCGCGCCCGCc -3'
miRNA:   3'- -UGCCG----CGGG-----------CCGCuCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 99058 0.74 0.101362
Target:  5'- cGCGGCGCCCGcccacgccgcGCGAGgaCGCGCUCGa -3'
miRNA:   3'- -UGCCGCGGGC----------CGCUCggGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 111812 0.74 0.101362
Target:  5'- gACGGCGCCUGGCu-GCuCCGCGUgacggCUGCg -3'
miRNA:   3'- -UGCCGCGGGCCGcuCG-GGCGCG-----GGCG- -5'
6758 3' -68.8 NC_001875.2 + 14489 0.73 0.10386
Target:  5'- gACGGCcagccgGCCCGcCGGuucGCCCGCGCCgCGCc -3'
miRNA:   3'- -UGCCG------CGGGCcGCU---CGGGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 83610 0.73 0.106417
Target:  5'- cACGGUGUUCGGCGcGuUCCGCGCCaGCa -3'
miRNA:   3'- -UGCCGCGGGCCGCuC-GGGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 42456 0.73 0.109032
Target:  5'- aGCGGcCGCUgCGGCGAGCCaCGCaGCaacaCGCg -3'
miRNA:   3'- -UGCC-GCGG-GCCGCUCGG-GCG-CGg---GCG- -5'
6758 3' -68.8 NC_001875.2 + 66113 0.73 0.111708
Target:  5'- cGCGGCGggCGGCGAGgCgGCgccGCCCGCg -3'
miRNA:   3'- -UGCCGCggGCCGCUCgGgCG---CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 90982 0.73 0.113617
Target:  5'- gAUGGCGCCCgcggugcgcgucuuGGCGAGCgCCGUcuuGCCCa- -3'
miRNA:   3'- -UGCCGCGGG--------------CCGCUCG-GGCG---CGGGcg -5'
6758 3' -68.8 NC_001875.2 + 43313 0.73 0.114445
Target:  5'- aGCGGCGCgCGcGCGGGUCgGCGUgguugccgCCGCg -3'
miRNA:   3'- -UGCCGCGgGC-CGCUCGGgCGCG--------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 95405 0.73 0.120108
Target:  5'- cGCaGCGCgCCGGCGucgcaaagguaaGGCCUcgcgGCGCCCGUg -3'
miRNA:   3'- -UGcCGCG-GGCCGC------------UCGGG----CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 43696 0.73 0.120108
Target:  5'- uCGuGCGCCCacacaauuuuGGCGccgcucAGCaCCGUGCCCGCa -3'
miRNA:   3'- uGC-CGCGGG----------CCGC------UCG-GGCGCGGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.