miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 98617 1.1 0.000186
Target:  5'- aACGGCGCCCGGCGAGCCCGCGCCCGCg -3'
miRNA:   3'- -UGCCGCGGGCCGCUCGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 46526 0.81 0.02838
Target:  5'- gGCGagaGCGCCCgcGGCaauGCCCGCGCCCGCg -3'
miRNA:   3'- -UGC---CGCGGG--CCGcu-CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 59263 0.79 0.037483
Target:  5'- cGCaGCGCCCGcacccgcaGCGcccgcGCCCGCGCCCGCa -3'
miRNA:   3'- -UGcCGCGGGC--------CGCu----CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 123357 0.79 0.040838
Target:  5'- gACGGCGCCCGGCGuGGUguuuCCGCGCgacgugaccaagcacCCGCa -3'
miRNA:   3'- -UGCCGCGGGCCGC-UCG----GGCGCG---------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 32786 0.79 0.041459
Target:  5'- cGCGGCG-UgGGCGGGCgCCGCGCCgGCa -3'
miRNA:   3'- -UGCCGCgGgCCGCUCG-GGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 123272 0.78 0.048207
Target:  5'- uCGGCGCCCGGUucgagcaauuuGAGCa-GCGCCUGCa -3'
miRNA:   3'- uGCCGCGGGCCG-----------CUCGggCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 45458 0.77 0.053289
Target:  5'- uCGGCGCUCGGC--GCCCGCaGCCgCGCg -3'
miRNA:   3'- uGCCGCGGGCCGcuCGGGCG-CGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 3156 0.76 0.06346
Target:  5'- cGCGGCGUCgGGCggcgaguagguGAGCCgGCGgCCGCg -3'
miRNA:   3'- -UGCCGCGGgCCG-----------CUCGGgCGCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 94714 0.76 0.065058
Target:  5'- cGCGGaaagaCGCaaacgCCGGCGcGGCgCCGCGCCCGCa -3'
miRNA:   3'- -UGCC-----GCG-----GGCCGC-UCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 40605 0.76 0.07009
Target:  5'- uACGGCGCCgUGGUGGGCgccaccaCGCGCCuCGCc -3'
miRNA:   3'- -UGCCGCGG-GCCGCUCGg------GCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 43994 0.76 0.071848
Target:  5'- cACGGacaGCCCGaCGGGCgCCGUGCCCaGCg -3'
miRNA:   3'- -UGCCg--CGGGCcGCUCG-GGCGCGGG-CG- -5'
6758 3' -68.8 NC_001875.2 + 117341 0.75 0.081096
Target:  5'- cGCGGCGCgggcgaaCCGGCGGGCCgGCuGgCCGUc -3'
miRNA:   3'- -UGCCGCG-------GGCCGCUCGGgCG-CgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 31240 0.75 0.081296
Target:  5'- aGCGGcCGCggCCGGCGcccGGCCCGCGUaCGCg -3'
miRNA:   3'- -UGCC-GCG--GGCCGC---UCGGGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 130118 0.75 0.081296
Target:  5'- gGCGGCGCgaCCGGUG---UCGCGCCCGCa -3'
miRNA:   3'- -UGCCGCG--GGCCGCucgGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 79135 0.75 0.083323
Target:  5'- -gGGCGCCgCGGCGGGCUCGUuuGCCacgGCg -3'
miRNA:   3'- ugCCGCGG-GCCGCUCGGGCG--CGGg--CG- -5'
6758 3' -68.8 NC_001875.2 + 33032 0.75 0.083323
Target:  5'- --aGCGCagcgCGGCGGGCgCCGCGCCgCGCg -3'
miRNA:   3'- ugcCGCGg---GCCGCUCG-GGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 39982 0.75 0.085399
Target:  5'- -aGGCGCCCuGgGGGCCCGUGgCCGa -3'
miRNA:   3'- ugCCGCGGGcCgCUCGGGCGCgGGCg -5'
6758 3' -68.8 NC_001875.2 + 90209 0.74 0.089698
Target:  5'- cGCGGCucggaccuguucGaCCCGauacCGAuGCCCGCGCCCGCg -3'
miRNA:   3'- -UGCCG------------C-GGGCc---GCU-CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 52510 0.74 0.091924
Target:  5'- aGCGGCGCCaaaGGC-AGCgCCGCGCUCa- -3'
miRNA:   3'- -UGCCGCGGg--CCGcUCG-GGCGCGGGcg -5'
6758 3' -68.8 NC_001875.2 + 76866 0.74 0.091924
Target:  5'- -aGGCGCCCaGcGCGAGCgaCGCGUCCGg -3'
miRNA:   3'- ugCCGCGGG-C-CGCUCGg-GCGCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.