miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 452 0.71 0.156161
Target:  5'- --cGUGCaCCGGCGAGUguUCGCGCuuGCa -3'
miRNA:   3'- ugcCGCG-GGCCGCUCG--GGCGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 1404 0.68 0.247227
Target:  5'- aGCGGCGCCCuGGUGuGCUauuuuuagcggUGCGUCaGCg -3'
miRNA:   3'- -UGCCGCGGG-CCGCuCGG-----------GCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 2066 0.71 0.148947
Target:  5'- gACGGUGCuCCGGCaaccGA-CCCGCGCaguaCGCu -3'
miRNA:   3'- -UGCCGCG-GGCCG----CUcGGGCGCGg---GCG- -5'
6758 3' -68.8 NC_001875.2 + 2311 0.69 0.206404
Target:  5'- cGCGcGCaGCUCGGCcAGCUCG-GCCUGCa -3'
miRNA:   3'- -UGC-CG-CGGGCCGcUCGGGCgCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 2663 0.71 0.16369
Target:  5'- uGCGGCG-CCGGCGGcGCCUggggcaacugcgGCGCCUcgGCa -3'
miRNA:   3'- -UGCCGCgGGCCGCU-CGGG------------CGCGGG--CG- -5'
6758 3' -68.8 NC_001875.2 + 3070 0.7 0.188265
Target:  5'- aGCGGCGCgCCGGgGucGCCCacggcgugcacGCGCCggggCGCg -3'
miRNA:   3'- -UGCCGCG-GGCCgCu-CGGG-----------CGCGG----GCG- -5'
6758 3' -68.8 NC_001875.2 + 3118 0.71 0.156161
Target:  5'- cGCGGCGCagaccugggCGGCGaAGCCCGCuGCgCGg -3'
miRNA:   3'- -UGCCGCGg--------GCCGC-UCGGGCG-CGgGCg -5'
6758 3' -68.8 NC_001875.2 + 3156 0.76 0.06346
Target:  5'- cGCGGCGUCgGGCggcgaguagguGAGCCgGCGgCCGCg -3'
miRNA:   3'- -UGCCGCGGgCCG-----------CUCGGgCGCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 3831 0.66 0.348555
Target:  5'- uCGGCGCacgCCGGCGcGgCCGCaGCCUcCa -3'
miRNA:   3'- uGCCGCG---GGCCGCuCgGGCG-CGGGcG- -5'
6758 3' -68.8 NC_001875.2 + 5264 0.69 0.217999
Target:  5'- cGCGuGUGCCaaaacugccacgcgaUGGcCGAcguGCCCGCGCCCGa -3'
miRNA:   3'- -UGC-CGCGG---------------GCC-GCU---CGGGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 5976 0.66 0.327491
Target:  5'- gUGGuCGCCgaCGGCaGGCCCaGCGCgUGCc -3'
miRNA:   3'- uGCC-GCGG--GCCGcUCGGG-CGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 6483 0.72 0.132222
Target:  5'- uACGGCGCCCaacGCgGAGUgCCGCGCCaacaCGCu -3'
miRNA:   3'- -UGCCGCGGGc--CG-CUCG-GGCGCGG----GCG- -5'
6758 3' -68.8 NC_001875.2 + 6914 0.67 0.281453
Target:  5'- aACGuGCGCUCGGCcgaGGGCguggaCCGCGCgcuacaacaaaacCCGCg -3'
miRNA:   3'- -UGC-CGCGGGCCG---CUCG-----GGCGCG-------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 8500 0.72 0.135423
Target:  5'- gGCGcCGUCCGuGUGGGCgCCGCGCaCUGCa -3'
miRNA:   3'- -UGCcGCGGGC-CGCUCG-GGCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 9082 0.7 0.192664
Target:  5'- aACuGCGCCUguGGCGAGUCgGCGCuaaaccCCGCc -3'
miRNA:   3'- -UGcCGCGGG--CCGCUCGGgCGCG------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 9708 0.72 0.142038
Target:  5'- uCGuGCGCgCCGGCc-GCgCCGCGCCCGa -3'
miRNA:   3'- uGC-CGCG-GGCCGcuCG-GGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 9844 0.67 0.294513
Target:  5'- --aGCGCUCauuucgcuGGCGGGCaaCGUGCCCGCc -3'
miRNA:   3'- ugcCGCGGG--------CCGCUCGg-GCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 10457 0.68 0.270038
Target:  5'- cGCGGCGCggCGGCGcGCUCagugaaugGCGCuuGCu -3'
miRNA:   3'- -UGCCGCGg-GCCGCuCGGG--------CGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 12956 0.69 0.216029
Target:  5'- gACGGUcucGUCgCGGCGGGCgUGgGCuCCGCg -3'
miRNA:   3'- -UGCCG---CGG-GCCGCUCGgGCgCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 13908 0.68 0.26418
Target:  5'- cACGGCGUCuacugCGaGCGGGCCguCGCGUUCGUu -3'
miRNA:   3'- -UGCCGCGG-----GC-CGCUCGG--GCGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.