miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 131511 0.74 0.09989
Target:  5'- uGCGGCGCgCGGUGcagcGGCUggaagcggcgcaaagCGCGCCCGUg -3'
miRNA:   3'- -UGCCGCGgGCCGC----UCGG---------------GCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 130118 0.75 0.081296
Target:  5'- gGCGGCGCgaCCGGUG---UCGCGCCCGCa -3'
miRNA:   3'- -UGCCGCG--GGCCGCucgGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 128953 0.72 0.138694
Target:  5'- aGCGGCuaaggcgugaGCUgGGCGAGCggaugaCGCGCUCGCc -3'
miRNA:   3'- -UGCCG----------CGGgCCGCUCGg-----GCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 128774 0.68 0.247227
Target:  5'- -gGGCGacCCCGGCGcGCCgcugCGCGCCucuuaCGCg -3'
miRNA:   3'- ugCCGC--GGGCCGCuCGG----GCGCGG-----GCG- -5'
6758 3' -68.8 NC_001875.2 + 128303 0.66 0.341427
Target:  5'- cACGGCG-CCGGUGA-CgUGCGCCaaauGCg -3'
miRNA:   3'- -UGCCGCgGGCCGCUcGgGCGCGGg---CG- -5'
6758 3' -68.8 NC_001875.2 + 128011 0.67 0.294513
Target:  5'- uGCGGcCGCgCCGGCGuGCgCCGacgacgGCCgGUg -3'
miRNA:   3'- -UGCC-GCG-GGCCGCuCG-GGCg-----CGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 126320 0.74 0.094202
Target:  5'- aACGGCGgCCGGCGuaaacuGCgCGCGUgCGCc -3'
miRNA:   3'- -UGCCGCgGGCCGCu-----CGgGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 125967 0.66 0.348555
Target:  5'- uCGGCGCaUCGGCGAgggcaaacgcguGCUgGUGCaCUGCu -3'
miRNA:   3'- uGCCGCG-GGCCGCU------------CGGgCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 125879 0.66 0.346405
Target:  5'- uCGGCGaCCacauucacguguacuGCGAGgCCGCGCCCa- -3'
miRNA:   3'- uGCCGC-GGgc-------------CGCUCgGGCGCGGGcg -5'
6758 3' -68.8 NC_001875.2 + 125337 0.66 0.348555
Target:  5'- gACGGCGgCCaGCGuGUUgGCGCggcacuCCGCg -3'
miRNA:   3'- -UGCCGCgGGcCGCuCGGgCGCG------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 124725 0.7 0.171543
Target:  5'- aGCGGCGCgUGGCGgucaaugucGGCagCGCGCgCUGCa -3'
miRNA:   3'- -UGCCGCGgGCCGC---------UCGg-GCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 123357 0.79 0.040838
Target:  5'- gACGGCGCCCGGCGuGGUguuuCCGCGCgacgugaccaagcacCCGCa -3'
miRNA:   3'- -UGCCGCGGGCCGC-UCG----GGCGCG---------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 123272 0.78 0.048207
Target:  5'- uCGGCGCCCGGUucgagcaauuuGAGCa-GCGCCUGCa -3'
miRNA:   3'- uGCCGCGGGCCG-----------CUCGggCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 122803 0.67 0.307385
Target:  5'- cCGGCGCggCCGGCG-GCUCcaaacgcaagGCGUCCGa -3'
miRNA:   3'- uGCCGCG--GGCCGCuCGGG----------CGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 122145 0.66 0.33371
Target:  5'- cCGGCGCgcacgaCGGCGAGCCCcaacggaGCGguguaCCUGUu -3'
miRNA:   3'- uGCCGCGg-----GCCGCUCGGG-------CGC-----GGGCG- -5'
6758 3' -68.8 NC_001875.2 + 121140 0.66 0.326805
Target:  5'- uCGGCGUUCGaGCGGggcGUCCagccguugcggcaGCGCCUGCg -3'
miRNA:   3'- uGCCGCGGGC-CGCU---CGGG-------------CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 120743 0.7 0.197153
Target:  5'- uGCGGCGCCgagacggGGCcguguccaGGGCgCGCGCCaCGCc -3'
miRNA:   3'- -UGCCGCGGg------CCG--------CUCGgGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 118362 0.67 0.303479
Target:  5'- aGCGGCgGCCCGcuguacgaguGCGAccugugcaaggaggcGUCCGCcGaCCCGCg -3'
miRNA:   3'- -UGCCG-CGGGC----------CGCU---------------CGGGCG-C-GGGCG- -5'
6758 3' -68.8 NC_001875.2 + 117341 0.75 0.081096
Target:  5'- cGCGGCGCgggcgaaCCGGCGGGCCgGCuGgCCGUc -3'
miRNA:   3'- -UGCCGCG-------GGCCGCUCGGgCG-CgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 115269 0.66 0.341427
Target:  5'- aAUGGC-CCUGGCGAuaaaaucauGUuaGCGCgCCGCg -3'
miRNA:   3'- -UGCCGcGGGCCGCU---------CGggCGCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.