miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 31716 0.65 0.361649
Target:  5'- cCGGCGCauuacuuUCGGCGAaguugGCCCGCGgCguuugagCGCg -3'
miRNA:   3'- uGCCGCG-------GGCCGCU-----CGGGCGCgG-------GCG- -5'
6758 3' -68.8 NC_001875.2 + 122145 0.66 0.33371
Target:  5'- cCGGCGCgcacgaCGGCGAGCCCcaacggaGCGguguaCCUGUu -3'
miRNA:   3'- uGCCGCGg-----GCCGCUCGGG-------CGC-----GGGCG- -5'
6758 3' -68.8 NC_001875.2 + 5976 0.66 0.327491
Target:  5'- gUGGuCGCCgaCGGCaGGCCCaGCGCgUGCc -3'
miRNA:   3'- uGCC-GCGG--GCCGcUCGGG-CGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 114012 0.66 0.320682
Target:  5'- uCGGCGCCCucgcgcauGGCG-GCCgCGCgGUCCa- -3'
miRNA:   3'- uGCCGCGGG--------CCGCuCGG-GCG-CGGGcg -5'
6758 3' -68.8 NC_001875.2 + 65726 0.66 0.33931
Target:  5'- gGCGGCGCcgccucgccgcccgCCGcGCGGGCCUcgGCGUauUCGUg -3'
miRNA:   3'- -UGCCGCG--------------GGC-CGCUCGGG--CGCG--GGCG- -5'
6758 3' -68.8 NC_001875.2 + 108567 0.66 0.327491
Target:  5'- uACGGCGC--GGCGGuGCUgGCGCUgCGCu -3'
miRNA:   3'- -UGCCGCGggCCGCU-CGGgCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 68585 0.66 0.320682
Target:  5'- gUGGCGCCgcUGGCcgccGAGCCCgacGCGUuuGUg -3'
miRNA:   3'- uGCCGCGG--GCCG----CUCGGG---CGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 95738 0.66 0.334406
Target:  5'- aGCGGCGCCgCcgccGCGuGCugCCGCGCgaGCg -3'
miRNA:   3'- -UGCCGCGG-Gc---CGCuCG--GGCGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 29240 0.66 0.327491
Target:  5'- cGCGGCuUCCGuggcauacuGCGGGUgCGCGgCCGCc -3'
miRNA:   3'- -UGCCGcGGGC---------CGCUCGgGCGCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 72961 0.66 0.334406
Target:  5'- -gGGCGCCaCGGCGcGCCUGauuaGgUUGCg -3'
miRNA:   3'- ugCCGCGG-GCCGCuCGGGCg---CgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 42303 0.66 0.327491
Target:  5'- cGCGGCGCCaaguacagauCGaGCGcGCCCaGCGgCCCcagGCg -3'
miRNA:   3'- -UGCCGCGG----------GC-CGCuCGGG-CGC-GGG---CG- -5'
6758 3' -68.8 NC_001875.2 + 110382 0.66 0.320682
Target:  5'- uAUGGCcgacgGCUCGuGCGuGCCCGUggagaucaaguGCCCGUu -3'
miRNA:   3'- -UGCCG-----CGGGC-CGCuCGGGCG-----------CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 98790 0.66 0.341427
Target:  5'- cGCGGaacgcuauCGCgCGGCGcggcGCCCGCcGCgCUGCg -3'
miRNA:   3'- -UGCC--------GCGgGCCGCu---CGGGCG-CG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 50025 0.66 0.320682
Target:  5'- gUGGuCGCCgggCGGCGAGgCgGCcgGCCCGUc -3'
miRNA:   3'- uGCC-GCGG---GCCGCUCgGgCG--CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 23815 0.66 0.327491
Target:  5'- cGCGGCGUCgGGCGcG-CCGUGUCUcugGCg -3'
miRNA:   3'- -UGCCGCGGgCCGCuCgGGCGCGGG---CG- -5'
6758 3' -68.8 NC_001875.2 + 64912 0.66 0.341427
Target:  5'- --cGCGCCuCGuugauGCGcauGCCCGUGCCCaGCa -3'
miRNA:   3'- ugcCGCGG-GC-----CGCu--CGGGCGCGGG-CG- -5'
6758 3' -68.8 NC_001875.2 + 27340 0.66 0.327491
Target:  5'- gACGGCGUuucgCCGGCucgcaucaugcGGCUCaccagcacguuGCGCCCGCu -3'
miRNA:   3'- -UGCCGCG----GGCCGc----------UCGGG-----------CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 90387 0.66 0.327491
Target:  5'- cGCGcGCGCcgcaaCCGGC--GCCUGUGCgCGCg -3'
miRNA:   3'- -UGC-CGCG-----GGCCGcuCGGGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 106464 0.66 0.357246
Target:  5'- uCGGCGCCgGGCcaacguuGAcggcuuugaaaaacaGCUCGCcgguguaGCCCGCg -3'
miRNA:   3'- uGCCGCGGgCCG-------CU---------------CGGGCG-------CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 98280 0.66 0.341427
Target:  5'- cAUGGUGCCCcgcGGCGAccgcacugugGCCaacgCGUGCuuGCa -3'
miRNA:   3'- -UGCCGCGGG---CCGCU----------CGG----GCGCGggCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.