miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 95405 0.73 0.120108
Target:  5'- cGCaGCGCgCCGGCGucgcaaagguaaGGCCUcgcgGCGCCCGUg -3'
miRNA:   3'- -UGcCGCG-GGCCGC------------UCGGG----CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 71917 0.74 0.098679
Target:  5'- gGCGuGCGCgUCGGCGAGCgccuugaCCGCGCgcuCCGCg -3'
miRNA:   3'- -UGC-CGCG-GGCCGCUCG-------GGCGCG---GGCG- -5'
6758 3' -68.8 NC_001875.2 + 131511 0.74 0.09989
Target:  5'- uGCGGCGCgCGGUGcagcGGCUggaagcggcgcaaagCGCGCCCGUg -3'
miRNA:   3'- -UGCCGCGgGCCGC----UCGG---------------GCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 111812 0.74 0.101362
Target:  5'- gACGGCGCCUGGCu-GCuCCGCGUgacggCUGCg -3'
miRNA:   3'- -UGCCGCGGGCCGcuCG-GGCGCG-----GGCG- -5'
6758 3' -68.8 NC_001875.2 + 25918 0.74 0.101362
Target:  5'- aGCGGCcaauGCCCgaguuuuucguGGUG-GCgCCGCGCCCGCc -3'
miRNA:   3'- -UGCCG----CGGG-----------CCGCuCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 83610 0.73 0.106417
Target:  5'- cACGGUGUUCGGCGcGuUCCGCGCCaGCa -3'
miRNA:   3'- -UGCCGCGGGCCGCuC-GGGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 42456 0.73 0.109032
Target:  5'- aGCGGcCGCUgCGGCGAGCCaCGCaGCaacaCGCg -3'
miRNA:   3'- -UGCC-GCGG-GCCGCUCGG-GCG-CGg---GCG- -5'
6758 3' -68.8 NC_001875.2 + 43313 0.73 0.114445
Target:  5'- aGCGGCGCgCGcGCGGGUCgGCGUgguugccgCCGCg -3'
miRNA:   3'- -UGCCGCGgGC-CGCUCGGgCGCG--------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 43696 0.73 0.120108
Target:  5'- uCGuGCGCCCacacaauuuuGGCGccgcucAGCaCCGUGCCCGCa -3'
miRNA:   3'- uGC-CGCGGG----------CCGC------UCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 107818 0.74 0.096534
Target:  5'- cAC-GCGaCCGcCGAGCCCGCGCCCGg -3'
miRNA:   3'- -UGcCGCgGGCcGCUCGGGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 30959 0.74 0.094202
Target:  5'- cAUGGCGCCCacGCGcGCgCUGCGCCuCGCg -3'
miRNA:   3'- -UGCCGCGGGc-CGCuCG-GGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 126320 0.74 0.094202
Target:  5'- aACGGCGgCCGGCGuaaacuGCgCGCGUgCGCc -3'
miRNA:   3'- -UGCCGCgGGCCGCu-----CGgGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 45458 0.77 0.053289
Target:  5'- uCGGCGCUCGGC--GCCCGCaGCCgCGCg -3'
miRNA:   3'- uGCCGCGGGCCGcuCGGGCG-CGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 40605 0.76 0.07009
Target:  5'- uACGGCGCCgUGGUGGGCgccaccaCGCGCCuCGCc -3'
miRNA:   3'- -UGCCGCGG-GCCGCUCGg------GCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 43994 0.76 0.071848
Target:  5'- cACGGacaGCCCGaCGGGCgCCGUGCCCaGCg -3'
miRNA:   3'- -UGCCg--CGGGCcGCUCG-GGCGCGGG-CG- -5'
6758 3' -68.8 NC_001875.2 + 117341 0.75 0.081096
Target:  5'- cGCGGCGCgggcgaaCCGGCGGGCCgGCuGgCCGUc -3'
miRNA:   3'- -UGCCGCG-------GGCCGCUCGGgCG-CgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 79135 0.75 0.083323
Target:  5'- -gGGCGCCgCGGCGGGCUCGUuuGCCacgGCg -3'
miRNA:   3'- ugCCGCGG-GCCGCUCGGGCG--CGGg--CG- -5'
6758 3' -68.8 NC_001875.2 + 39982 0.75 0.085399
Target:  5'- -aGGCGCCCuGgGGGCCCGUGgCCGa -3'
miRNA:   3'- ugCCGCGGGcCgCUCGGGCGCgGGCg -5'
6758 3' -68.8 NC_001875.2 + 90209 0.74 0.089698
Target:  5'- cGCGGCucggaccuguucGaCCCGauacCGAuGCCCGCGCCCGCg -3'
miRNA:   3'- -UGCCG------------C-GGGCc---GCU-CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 52510 0.74 0.091924
Target:  5'- aGCGGCGCCaaaGGC-AGCgCCGCGCUCa- -3'
miRNA:   3'- -UGCCGCGGg--CCGcUCG-GGCGCGGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.