miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 98617 1.1 0.000186
Target:  5'- aACGGCGCCCGGCGAGCCCGCGCCCGCg -3'
miRNA:   3'- -UGCCGCGGGCCGCUCGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 66113 0.73 0.111708
Target:  5'- cGCGGCGggCGGCGAGgCgGCgccGCCCGCg -3'
miRNA:   3'- -UGCCGCggGCCGCUCgGgCG---CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 94252 0.72 0.123036
Target:  5'- uGCGGCcgGCCgCGGC--GCUCGCGCCgGCg -3'
miRNA:   3'- -UGCCG--CGG-GCCGcuCGGGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 106464 0.66 0.357246
Target:  5'- uCGGCGCCgGGCcaacguuGAcggcuuugaaaaacaGCUCGCcgguguaGCCCGCg -3'
miRNA:   3'- uGCCGCGGgCCG-------CU---------------CGGGCG-------CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 123272 0.78 0.048207
Target:  5'- uCGGCGCCCGGUucgagcaauuuGAGCa-GCGCCUGCa -3'
miRNA:   3'- uGCCGCGGGCCG-----------CUCGggCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 3156 0.76 0.06346
Target:  5'- cGCGGCGUCgGGCggcgaguagguGAGCCgGCGgCCGCg -3'
miRNA:   3'- -UGCCGCGGgCCG-----------CUCGGgCGCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 31240 0.75 0.081296
Target:  5'- aGCGGcCGCggCCGGCGcccGGCCCGCGUaCGCg -3'
miRNA:   3'- -UGCC-GCG--GGCCGC---UCGGGCGCGgGCG- -5'
6758 3' -68.8 NC_001875.2 + 130118 0.75 0.081296
Target:  5'- gGCGGCGCgaCCGGUG---UCGCGCCCGCa -3'
miRNA:   3'- -UGCCGCG--GGCCGCucgGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 38769 0.74 0.096534
Target:  5'- uCGGCGUCCuguugGGCgGAGagCGCGCCCGCa -3'
miRNA:   3'- uGCCGCGGG-----CCG-CUCggGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 14489 0.73 0.10386
Target:  5'- gACGGCcagccgGCCCGcCGGuucGCCCGCGCCgCGCc -3'
miRNA:   3'- -UGCCG------CGGGCcGCU---CGGGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 102578 0.74 0.096534
Target:  5'- cCGGCGCggUCGGCG-GCCgCGCaCCCGCa -3'
miRNA:   3'- uGCCGCG--GGCCGCuCGG-GCGcGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 76866 0.74 0.091924
Target:  5'- -aGGCGCCCaGcGCGAGCgaCGCGUCCGg -3'
miRNA:   3'- ugCCGCGGG-C-CGCUCGg-GCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 46526 0.81 0.02838
Target:  5'- gGCGagaGCGCCCgcGGCaauGCCCGCGCCCGCg -3'
miRNA:   3'- -UGC---CGCGGG--CCGcu-CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 65805 0.74 0.09892
Target:  5'- cGCGGUGCCUGcGCGGcGCCaaGCGCuuGCa -3'
miRNA:   3'- -UGCCGCGGGC-CGCU-CGGg-CGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 59263 0.79 0.037483
Target:  5'- cGCaGCGCCCGcacccgcaGCGcccgcGCCCGCGCCCGCa -3'
miRNA:   3'- -UGcCGCGGGC--------CGCu----CGGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 33032 0.75 0.083323
Target:  5'- --aGCGCagcgCGGCGGGCgCCGCGCCgCGCg -3'
miRNA:   3'- ugcCGCGg---GCCGCUCG-GGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 99058 0.74 0.101362
Target:  5'- cGCGGCGCCCGcccacgccgcGCGAGgaCGCGCUCGa -3'
miRNA:   3'- -UGCCGCGGGC----------CGCUCggGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 90982 0.73 0.113617
Target:  5'- gAUGGCGCCCgcggugcgcgucuuGGCGAGCgCCGUcuuGCCCa- -3'
miRNA:   3'- -UGCCGCGGG--------------CCGCUCG-GGCG---CGGGcg -5'
6758 3' -68.8 NC_001875.2 + 123357 0.79 0.040838
Target:  5'- gACGGCGCCCGGCGuGGUguuuCCGCGCgacgugaccaagcacCCGCa -3'
miRNA:   3'- -UGCCGCGGGCCGC-UCG----GGCGCG---------------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 94714 0.76 0.065058
Target:  5'- cGCGGaaagaCGCaaacgCCGGCGcGGCgCCGCGCCCGCa -3'
miRNA:   3'- -UGCC-----GCG-----GGCCGC-UCG-GGCGCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.