miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 14489 0.73 0.10386
Target:  5'- gACGGCcagccgGCCCGcCGGuucGCCCGCGCCgCGCc -3'
miRNA:   3'- -UGCCG------CGGGCcGCU---CGGGCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 16275 0.72 0.135423
Target:  5'- gUGGUGCCCGGCGAccgcacGUCCauguGCGCCaGCa -3'
miRNA:   3'- uGCCGCGGGCCGCU------CGGG----CGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 16748 0.66 0.341427
Target:  5'- uACGuGUuugacaGCCCGGCGucguGaCUGCGCgCCGCg -3'
miRNA:   3'- -UGC-CG------CGGGCCGCu---CgGGCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 18275 0.66 0.341427
Target:  5'- aAUGGCGCgCCGuGCGcGaCCGCGCCg-- -3'
miRNA:   3'- -UGCCGCG-GGC-CGCuCgGGCGCGGgcg -5'
6758 3' -68.8 NC_001875.2 + 18433 0.69 0.211169
Target:  5'- uCGGCGCgaGGCGcGGUCCGCGUggCGCg -3'
miRNA:   3'- uGCCGCGggCCGC-UCGGGCGCGg-GCG- -5'
6758 3' -68.8 NC_001875.2 + 18481 0.68 0.258427
Target:  5'- uGCGccGCGCCgCaGCGAcGCagCCGCGCCCGa -3'
miRNA:   3'- -UGC--CGCGG-GcCGCU-CG--GGCGCGGGCg -5'
6758 3' -68.8 NC_001875.2 + 18692 0.68 0.247227
Target:  5'- gGCGcGCGCgCCGGCGuGCacauuaaCGUG-CCGCa -3'
miRNA:   3'- -UGC-CGCG-GGCCGCuCGg------GCGCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 19943 0.7 0.175595
Target:  5'- cACGgaGCGgCCGGCGcgacgguccGGCCgGCGCCuCGCc -3'
miRNA:   3'- -UGC--CGCgGGCCGC---------UCGGgCGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 20031 0.68 0.270038
Target:  5'- cGCGGagcaGCCaGGCGccgucGGCCgCGUGCaCCGCc -3'
miRNA:   3'- -UGCCg---CGGgCCGC-----UCGG-GCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 20767 0.66 0.355059
Target:  5'- cACGGCG-CCGGCGucguccacguagaAGCCgucgaCGCGCagugCGCg -3'
miRNA:   3'- -UGCCGCgGGCCGC-------------UCGG-----GCGCGg---GCG- -5'
6758 3' -68.8 NC_001875.2 + 20927 0.67 0.288236
Target:  5'- -gGGCGCgCCauGGCcAGCUCaaaCGCCCGCg -3'
miRNA:   3'- ugCCGCG-GG--CCGcUCGGGc--GCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 21556 0.71 0.145455
Target:  5'- uCGGCGa-CGGgGcAGCCCGCGCgcuCCGCg -3'
miRNA:   3'- uGCCGCggGCCgC-UCGGGCGCG---GGCG- -5'
6758 3' -68.8 NC_001875.2 + 21956 0.67 0.282065
Target:  5'- cGCGGCGCggggaUgGGCGGcGCCaGCGCCaGCu -3'
miRNA:   3'- -UGCCGCG-----GgCCGCU-CGGgCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 22954 0.66 0.355787
Target:  5'- gGCGGCGCCauGUacGCCUcCGCCgCGCu -3'
miRNA:   3'- -UGCCGCGGgcCGcuCGGGcGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 23815 0.66 0.327491
Target:  5'- cGCGGCGUCgGGCGcG-CCGUGUCUcugGCg -3'
miRNA:   3'- -UGCCGCGGgCCGCuCgGGCGCGGG---CG- -5'
6758 3' -68.8 NC_001875.2 + 24014 0.68 0.247227
Target:  5'- -aGGCGCaCCGggcGCGGGCUCGgCGgUCGCg -3'
miRNA:   3'- ugCCGCG-GGC---CGCUCGGGC-GCgGGCG- -5'
6758 3' -68.8 NC_001875.2 + 25816 0.72 0.142038
Target:  5'- uCGGCGCCCGcCGAGCaCUGCaacGCCCa- -3'
miRNA:   3'- uGCCGCGGGCcGCUCG-GGCG---CGGGcg -5'
6758 3' -68.8 NC_001875.2 + 25918 0.74 0.101362
Target:  5'- aGCGGCcaauGCCCgaguuuuucguGGUG-GCgCCGCGCCCGCc -3'
miRNA:   3'- -UGCCG----CGGG-----------CCGCuCG-GGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 27340 0.66 0.327491
Target:  5'- gACGGCGUuucgCCGGCucgcaucaugcGGCUCaccagcacguuGCGCCCGCu -3'
miRNA:   3'- -UGCCGCG----GGCCGc----------UCGGG-----------CGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 29240 0.66 0.327491
Target:  5'- cGCGGCuUCCGuggcauacuGCGGGUgCGCGgCCGCc -3'
miRNA:   3'- -UGCCGcGGGC---------CGCUCGgGCGCgGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.