miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 3' -63 NC_001875.2 + 96793 0.99 0.003476
Target:  5'- cGGGCACCUCCUGC-ACGGGCCGUCCGu -3'
miRNA:   3'- -CCCGUGGAGGACGcUGCCCGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 91874 0.75 0.186553
Target:  5'- aGGGCGCCUgCUggugcgGCGGCGGGUCGggcaaCCGc -3'
miRNA:   3'- -CCCGUGGAgGA------CGCUGCCCGGCa----GGC- -5'
6760 3' -63 NC_001875.2 + 13910 0.73 0.235973
Target:  5'- cGGCGUCUaCUGCGAgCGGGCCGUCgCGu -3'
miRNA:   3'- cCCGUGGAgGACGCU-GCCCGGCAG-GC- -5'
6760 3' -63 NC_001875.2 + 85824 0.72 0.270617
Target:  5'- cGGCGCCagCUGCGugGGcgGCCGaUCCu -3'
miRNA:   3'- cCCGUGGagGACGCugCC--CGGC-AGGc -5'
6760 3' -63 NC_001875.2 + 14477 0.71 0.309238
Target:  5'- cGGCGCCUCCc-CGACGGccaGCCGgcccgCCGg -3'
miRNA:   3'- cCCGUGGAGGacGCUGCC---CGGCa----GGC- -5'
6760 3' -63 NC_001875.2 + 94738 0.7 0.351922
Target:  5'- cGGCGCCgcgCCcgcacacccacGCGGCGGuGUCGUCCGc -3'
miRNA:   3'- cCCGUGGa--GGa----------CGCUGCC-CGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 32825 0.7 0.357166
Target:  5'- cGGCGCCgCUUGCGAgcgUGGcaccaaaaccugguGCCGUCCGg -3'
miRNA:   3'- cCCGUGGaGGACGCU---GCC--------------CGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 60858 0.7 0.390564
Target:  5'- uGGGCGuuUCCaggcucgugGCGGCccGGCCGUCCa -3'
miRNA:   3'- -CCCGUggAGGa--------CGCUGc-CCGGCAGGc -5'
6760 3' -63 NC_001875.2 + 79134 0.7 0.390564
Target:  5'- cGGGCGCC----GCGGCGGGCuCGUuuGc -3'
miRNA:   3'- -CCCGUGGaggaCGCUGCCCG-GCAggC- -5'
6760 3' -63 NC_001875.2 + 49333 0.7 0.390564
Target:  5'- uGGCACaguUCCUgcagcguggGCGGCGGGCCGUg-- -3'
miRNA:   3'- cCCGUGg--AGGA---------CGCUGCCCGGCAggc -5'
6760 3' -63 NC_001875.2 + 16228 0.69 0.406778
Target:  5'- cGGGCGagugugaCUgCgGCGACGaGGCCGUCaCGc -3'
miRNA:   3'- -CCCGUg------GAgGaCGCUGC-CCGGCAG-GC- -5'
6760 3' -63 NC_001875.2 + 113332 0.69 0.415042
Target:  5'- uGGGCuuUUCgUGCGGCGGGUCGggCgCGg -3'
miRNA:   3'- -CCCGugGAGgACGCUGCCCGGCa-G-GC- -5'
6760 3' -63 NC_001875.2 + 94319 0.69 0.440438
Target:  5'- uGGGCGCgUCCagGCagGGCGcGUCGUCCGc -3'
miRNA:   3'- -CCCGUGgAGGa-CG--CUGCcCGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 4527 0.68 0.493738
Target:  5'- cGGcGCACCgccggcugcgguUCCUGCGGuuuggGGGCCG-CCa -3'
miRNA:   3'- -CC-CGUGG------------AGGACGCUg----CCCGGCaGGc -5'
6760 3' -63 NC_001875.2 + 87842 0.67 0.502912
Target:  5'- uGGGCACggcgCC--CGuCGGGCUGUCCGu -3'
miRNA:   3'- -CCCGUGga--GGacGCuGCCCGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 120675 0.67 0.512159
Target:  5'- cGGCGCgCUgCUGUgcgccaucGACcGGCCGUCCa -3'
miRNA:   3'- cCCGUG-GAgGACG--------CUGcCCGGCAGGc -5'
6760 3' -63 NC_001875.2 + 61602 0.67 0.521476
Target:  5'- cGGGCGCCggCgGCGcuuCGGGCUGUgUCGg -3'
miRNA:   3'- -CCCGUGGagGaCGCu--GCCCGGCA-GGC- -5'
6760 3' -63 NC_001875.2 + 39031 0.67 0.521476
Target:  5'- -cGCACCUCggcaucgGCGGCGGcGCUGUaCCGc -3'
miRNA:   3'- ccCGUGGAGga-----CGCUGCC-CGGCA-GGC- -5'
6760 3' -63 NC_001875.2 + 33575 0.67 0.544093
Target:  5'- gGGGCACCaugcCCgagucgGCGAcguggcgguugaacaCGGGCagcaGUCCGu -3'
miRNA:   3'- -CCCGUGGa---GGa-----CGCU---------------GCCCGg---CAGGC- -5'
6760 3' -63 NC_001875.2 + 8498 0.66 0.568943
Target:  5'- cGGGCGCCgUCC-GUGugGGcGCCG-Cg- -3'
miRNA:   3'- -CCCGUGG-AGGaCGCugCC-CGGCaGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.