Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6760 | 3' | -63 | NC_001875.2 | + | 4527 | 0.68 | 0.493738 |
Target: 5'- cGGcGCACCgccggcugcgguUCCUGCGGuuuggGGGCCG-CCa -3' miRNA: 3'- -CC-CGUGG------------AGGACGCUg----CCCGGCaGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 8498 | 0.66 | 0.568943 |
Target: 5'- cGGGCGCCgUCC-GUGugGGcGCCG-Cg- -3' miRNA: 3'- -CCCGUGG-AGGaCGCugCC-CGGCaGgc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 13910 | 0.73 | 0.235973 |
Target: 5'- cGGCGUCUaCUGCGAgCGGGCCGUCgCGu -3' miRNA: 3'- cCCGUGGAgGACGCU-GCCCGGCAG-GC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 14477 | 0.71 | 0.309238 |
Target: 5'- cGGCGCCUCCc-CGACGGccaGCCGgcccgCCGg -3' miRNA: 3'- cCCGUGGAGGacGCUGCC---CGGCa----GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 16228 | 0.69 | 0.406778 |
Target: 5'- cGGGCGagugugaCUgCgGCGACGaGGCCGUCaCGc -3' miRNA: 3'- -CCCGUg------GAgGaCGCUGC-CCGGCAG-GC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 17824 | 0.66 | 0.578579 |
Target: 5'- gGGGCACCaugugCCUcaUGAUGGuGCCGgccgCCGa -3' miRNA: 3'- -CCCGUGGa----GGAc-GCUGCC-CGGCa---GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 29937 | 0.66 | 0.597948 |
Target: 5'- gGGGcCGCCcaggcagCCgaagGCGACGGcGCUGUuuGc -3' miRNA: 3'- -CCC-GUGGa------GGa---CGCUGCC-CGGCAggC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 30197 | 0.66 | 0.617409 |
Target: 5'- uGGCGCCguucgCC-GCGACGG-CCGUUg- -3' miRNA: 3'- cCCGUGGa----GGaCGCUGCCcGGCAGgc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 32825 | 0.7 | 0.357166 |
Target: 5'- cGGCGCCgCUUGCGAgcgUGGcaccaaaaccugguGCCGUCCGg -3' miRNA: 3'- cCCGUGGaGGACGCU---GCC--------------CGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 33575 | 0.67 | 0.544093 |
Target: 5'- gGGGCACCaugcCCgagucgGCGAcguggcgguugaacaCGGGCagcaGUCCGu -3' miRNA: 3'- -CCCGUGGa---GGa-----CGCU---------------GCCCGg---CAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 39031 | 0.67 | 0.521476 |
Target: 5'- -cGCACCUCggcaucgGCGGCGGcGCUGUaCCGc -3' miRNA: 3'- ccCGUGGAGga-----CGCUGCC-CGGCA-GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 46629 | 0.66 | 0.597948 |
Target: 5'- cGGCGCUaCCgcGCGGCGGcCCGUCgGc -3' miRNA: 3'- cCCGUGGaGGa-CGCUGCCcGGCAGgC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 49333 | 0.7 | 0.390564 |
Target: 5'- uGGCACaguUCCUgcagcguggGCGGCGGGCCGUg-- -3' miRNA: 3'- cCCGUGg--AGGA---------CGCUGCCCGGCAggc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 52021 | 0.66 | 0.568943 |
Target: 5'- uGGGCACCaCCaUGC--CGGGCaCGUUCa -3' miRNA: 3'- -CCCGUGGaGG-ACGcuGCCCG-GCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 54800 | 0.66 | 0.617409 |
Target: 5'- cGGCACUagcaCC-GCGACGcGGCUG-CCGa -3' miRNA: 3'- cCCGUGGa---GGaCGCUGC-CCGGCaGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 57407 | 0.66 | 0.596977 |
Target: 5'- gGGGCugCUUaUGCaGGCGGcgugcaacugcauGUCGUCCGu -3' miRNA: 3'- -CCCGugGAGgACG-CUGCC-------------CGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 60858 | 0.7 | 0.390564 |
Target: 5'- uGGGCGuuUCCaggcucgugGCGGCccGGCCGUCCa -3' miRNA: 3'- -CCCGUggAGGa--------CGCUGc-CCGGCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 61602 | 0.67 | 0.521476 |
Target: 5'- cGGGCGCCggCgGCGcuuCGGGCUGUgUCGg -3' miRNA: 3'- -CCCGUGGagGaCGCu--GCCCGGCA-GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 73695 | 0.66 | 0.60767 |
Target: 5'- cGGCGgCUgCUGCGGCGgcugcGGCUGUUgGg -3' miRNA: 3'- cCCGUgGAgGACGCUGC-----CCGGCAGgC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 79134 | 0.7 | 0.390564 |
Target: 5'- cGGGCGCC----GCGGCGGGCuCGUuuGc -3' miRNA: 3'- -CCCGUGGaggaCGCUGCCCG-GCAggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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