Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6760 | 3' | -63 | NC_001875.2 | + | 126011 | 0.66 | 0.60767 |
Target: 5'- cGGGCGCgUCCagaucgGCGGCGcuGGCaGUCUa -3' miRNA: 3'- -CCCGUGgAGGa-----CGCUGC--CCGgCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 120675 | 0.67 | 0.512159 |
Target: 5'- cGGCGCgCUgCUGUgcgccaucGACcGGCCGUCCa -3' miRNA: 3'- cCCGUG-GAgGACG--------CUGcCCGGCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 113332 | 0.69 | 0.415042 |
Target: 5'- uGGGCuuUUCgUGCGGCGGGUCGggCgCGg -3' miRNA: 3'- -CCCGugGAGgACGCUGCCCGGCa-G-GC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 111977 | 0.66 | 0.568943 |
Target: 5'- cGGCGCCcgcgCC-GCGACGcGGCCGagUCUu -3' miRNA: 3'- cCCGUGGa---GGaCGCUGC-CCGGC--AGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 100574 | 0.66 | 0.588249 |
Target: 5'- --aCGCCUCguCUGCGucgacgcguacGCGGGCCGggcgCCGg -3' miRNA: 3'- cccGUGGAG--GACGC-----------UGCCCGGCa---GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 99900 | 0.66 | 0.60767 |
Target: 5'- cGGCAgCCUCgaGCGcaacgaGCGGGCCG-CgCGc -3' miRNA: 3'- cCCGU-GGAGgaCGC------UGCCCGGCaG-GC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 96861 | 0.66 | 0.568943 |
Target: 5'- uGGGCGCCacUUCUa--GCGGGCgGUCCa -3' miRNA: 3'- -CCCGUGG--AGGAcgcUGCCCGgCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 96793 | 0.99 | 0.003476 |
Target: 5'- cGGGCACCUCCUGC-ACGGGCCGUCCGu -3' miRNA: 3'- -CCCGUGGAGGACGcUGCCCGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 94738 | 0.7 | 0.351922 |
Target: 5'- cGGCGCCgcgCCcgcacacccacGCGGCGGuGUCGUCCGc -3' miRNA: 3'- cCCGUGGa--GGa----------CGCUGCC-CGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 94319 | 0.69 | 0.440438 |
Target: 5'- uGGGCGCgUCCagGCagGGCGcGUCGUCCGc -3' miRNA: 3'- -CCCGUGgAGGa-CG--CUGCcCGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 91874 | 0.75 | 0.186553 |
Target: 5'- aGGGCGCCUgCUggugcgGCGGCGGGUCGggcaaCCGc -3' miRNA: 3'- -CCCGUGGAgGA------CGCUGCCCGGCa----GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 87842 | 0.67 | 0.502912 |
Target: 5'- uGGGCACggcgCC--CGuCGGGCUGUCCGu -3' miRNA: 3'- -CCCGUGga--GGacGCuGCCCGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 85824 | 0.72 | 0.270617 |
Target: 5'- cGGCGCCagCUGCGugGGcgGCCGaUCCu -3' miRNA: 3'- cCCGUGGagGACGCugCC--CGGC-AGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 79134 | 0.7 | 0.390564 |
Target: 5'- cGGGCGCC----GCGGCGGGCuCGUuuGc -3' miRNA: 3'- -CCCGUGGaggaCGCUGCCCG-GCAggC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 73695 | 0.66 | 0.60767 |
Target: 5'- cGGCGgCUgCUGCGGCGgcugcGGCUGUUgGg -3' miRNA: 3'- cCCGUgGAgGACGCUGC-----CCGGCAGgC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 61602 | 0.67 | 0.521476 |
Target: 5'- cGGGCGCCggCgGCGcuuCGGGCUGUgUCGg -3' miRNA: 3'- -CCCGUGGagGaCGCu--GCCCGGCA-GGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 60858 | 0.7 | 0.390564 |
Target: 5'- uGGGCGuuUCCaggcucgugGCGGCccGGCCGUCCa -3' miRNA: 3'- -CCCGUggAGGa--------CGCUGc-CCGGCAGGc -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 57407 | 0.66 | 0.596977 |
Target: 5'- gGGGCugCUUaUGCaGGCGGcgugcaacugcauGUCGUCCGu -3' miRNA: 3'- -CCCGugGAGgACG-CUGCC-------------CGGCAGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 54800 | 0.66 | 0.617409 |
Target: 5'- cGGCACUagcaCC-GCGACGcGGCUG-CCGa -3' miRNA: 3'- cCCGUGGa---GGaCGCUGC-CCGGCaGGC- -5' |
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6760 | 3' | -63 | NC_001875.2 | + | 52021 | 0.66 | 0.568943 |
Target: 5'- uGGGCACCaCCaUGC--CGGGCaCGUUCa -3' miRNA: 3'- -CCCGUGGaGG-ACGcuGCCCG-GCAGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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