miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 3' -63 NC_001875.2 + 13910 0.73 0.235973
Target:  5'- cGGCGUCUaCUGCGAgCGGGCCGUCgCGu -3'
miRNA:   3'- cCCGUGGAgGACGCU-GCCCGGCAG-GC- -5'
6760 3' -63 NC_001875.2 + 30197 0.66 0.617409
Target:  5'- uGGCGCCguucgCC-GCGACGG-CCGUUg- -3'
miRNA:   3'- cCCGUGGa----GGaCGCUGCCcGGCAGgc -5'
6760 3' -63 NC_001875.2 + 29937 0.66 0.597948
Target:  5'- gGGGcCGCCcaggcagCCgaagGCGACGGcGCUGUuuGc -3'
miRNA:   3'- -CCC-GUGGa------GGa---CGCUGCC-CGGCAggC- -5'
6760 3' -63 NC_001875.2 + 100574 0.66 0.588249
Target:  5'- --aCGCCUCguCUGCGucgacgcguacGCGGGCCGggcgCCGg -3'
miRNA:   3'- cccGUGGAG--GACGC-----------UGCCCGGCa---GGC- -5'
6760 3' -63 NC_001875.2 + 17824 0.66 0.578579
Target:  5'- gGGGCACCaugugCCUcaUGAUGGuGCCGgccgCCGa -3'
miRNA:   3'- -CCCGUGGa----GGAc-GCUGCC-CGGCa---GGC- -5'
6760 3' -63 NC_001875.2 + 111977 0.66 0.568943
Target:  5'- cGGCGCCcgcgCC-GCGACGcGGCCGagUCUu -3'
miRNA:   3'- cCCGUGGa---GGaCGCUGC-CCGGC--AGGc -5'
6760 3' -63 NC_001875.2 + 8498 0.66 0.568943
Target:  5'- cGGGCGCCgUCC-GUGugGGcGCCG-Cg- -3'
miRNA:   3'- -CCCGUGG-AGGaCGCugCC-CGGCaGgc -5'
6760 3' -63 NC_001875.2 + 39031 0.67 0.521476
Target:  5'- -cGCACCUCggcaucgGCGGCGGcGCUGUaCCGc -3'
miRNA:   3'- ccCGUGGAGga-----CGCUGCC-CGGCA-GGC- -5'
6760 3' -63 NC_001875.2 + 120675 0.67 0.512159
Target:  5'- cGGCGCgCUgCUGUgcgccaucGACcGGCCGUCCa -3'
miRNA:   3'- cCCGUG-GAgGACG--------CUGcCCGGCAGGc -5'
6760 3' -63 NC_001875.2 + 85824 0.72 0.270617
Target:  5'- cGGCGCCagCUGCGugGGcgGCCGaUCCu -3'
miRNA:   3'- cCCGUGGagGACGCugCC--CGGC-AGGc -5'
6760 3' -63 NC_001875.2 + 32825 0.7 0.357166
Target:  5'- cGGCGCCgCUUGCGAgcgUGGcaccaaaaccugguGCCGUCCGg -3'
miRNA:   3'- cCCGUGGaGGACGCU---GCC--------------CGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 60858 0.7 0.390564
Target:  5'- uGGGCGuuUCCaggcucgugGCGGCccGGCCGUCCa -3'
miRNA:   3'- -CCCGUggAGGa--------CGCUGc-CCGGCAGGc -5'
6760 3' -63 NC_001875.2 + 79134 0.7 0.390564
Target:  5'- cGGGCGCC----GCGGCGGGCuCGUuuGc -3'
miRNA:   3'- -CCCGUGGaggaCGCUGCCCG-GCAggC- -5'
6760 3' -63 NC_001875.2 + 16228 0.69 0.406778
Target:  5'- cGGGCGagugugaCUgCgGCGACGaGGCCGUCaCGc -3'
miRNA:   3'- -CCCGUg------GAgGaCGCUGC-CCGGCAG-GC- -5'
6760 3' -63 NC_001875.2 + 4527 0.68 0.493738
Target:  5'- cGGcGCACCgccggcugcgguUCCUGCGGuuuggGGGCCG-CCa -3'
miRNA:   3'- -CC-CGUGG------------AGGACGCUg----CCCGGCaGGc -5'
6760 3' -63 NC_001875.2 + 54800 0.66 0.617409
Target:  5'- cGGCACUagcaCC-GCGACGcGGCUG-CCGa -3'
miRNA:   3'- cCCGUGGa---GGaCGCUGC-CCGGCaGGC- -5'
6760 3' -63 NC_001875.2 + 91874 0.75 0.186553
Target:  5'- aGGGCGCCUgCUggugcgGCGGCGGGUCGggcaaCCGc -3'
miRNA:   3'- -CCCGUGGAgGA------CGCUGCCCGGCa----GGC- -5'
6760 3' -63 NC_001875.2 + 14477 0.71 0.309238
Target:  5'- cGGCGCCUCCc-CGACGGccaGCCGgcccgCCGg -3'
miRNA:   3'- cCCGUGGAGGacGCUGCC---CGGCa----GGC- -5'
6760 3' -63 NC_001875.2 + 94738 0.7 0.351922
Target:  5'- cGGCGCCgcgCCcgcacacccacGCGGCGGuGUCGUCCGc -3'
miRNA:   3'- cCCGUGGa--GGa----------CGCUGCC-CGGCAGGC- -5'
6760 3' -63 NC_001875.2 + 49333 0.7 0.390564
Target:  5'- uGGCACaguUCCUgcagcguggGCGGCGGGCCGUg-- -3'
miRNA:   3'- cCCGUGg--AGGA---------CGCUGCCCGGCAggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.