miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 5' -53.6 NC_001875.2 + 437 0.72 0.708096
Target:  5'- aCUCGAGCGuGCCG-UCGugcAC-CGGCGAg -3'
miRNA:   3'- -GAGCUUGU-CGGCuAGCu--UGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 943 0.67 0.933848
Target:  5'- -cCGGACGGCUG-UUGAACUCGcUGAg -3'
miRNA:   3'- gaGCUUGUCGGCuAGCUUGAGCcGCU- -5'
6760 5' -53.6 NC_001875.2 + 3162 0.66 0.956186
Target:  5'- gUCGGGCGG-CGAguaggUGAGC-CGGCGGc -3'
miRNA:   3'- gAGCUUGUCgGCUa----GCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 4479 0.66 0.966775
Target:  5'- gUCG-ACAGCCucaaaGuACUCGGCGGg -3'
miRNA:   3'- gAGCuUGUCGGcuag-CuUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 7084 0.66 0.955015
Target:  5'- -aCGGGCGGCagcuacuacgugcgCGGcUCGGACggCGGCGAa -3'
miRNA:   3'- gaGCUUGUCG--------------GCU-AGCUUGa-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 9122 0.67 0.923205
Target:  5'- aCUCGGAC-GCCG--UGGACUCGcGCGc -3'
miRNA:   3'- -GAGCUUGuCGGCuaGCUUGAGC-CGCu -5'
6760 5' -53.6 NC_001875.2 + 10658 0.67 0.943508
Target:  5'- aCUUGGGCGGCgGAcUGcACUUGGCGc -3'
miRNA:   3'- -GAGCUUGUCGgCUaGCuUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 11155 0.7 0.804712
Target:  5'- -aUGGACGGCCGGUCGA---UGGCGc -3'
miRNA:   3'- gaGCUUGUCGGCUAGCUugaGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 19598 0.66 0.947973
Target:  5'- cCUCGAcCAGCUGGUC-AACUUGGg-- -3'
miRNA:   3'- -GAGCUuGUCGGCUAGcUUGAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 24008 0.66 0.952198
Target:  5'- gUCGcaaggcGCA-CCGGgcgCGGGCUCGGCGGu -3'
miRNA:   3'- gAGCu-----UGUcGGCUa--GCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 26797 0.66 0.946659
Target:  5'- -aCGAGCGGCUuAUCGGcaaccucaugaacaACUCGGUGu -3'
miRNA:   3'- gaGCUUGUCGGcUAGCU--------------UGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 31988 0.71 0.795623
Target:  5'- -gCGuACGGCCGGUuugUGAGCggCGGCGAc -3'
miRNA:   3'- gaGCuUGUCGGCUA---GCUUGa-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 32781 0.69 0.881167
Target:  5'- cCUCGcGCGGCgUGggCGGgcgccgcgccggcaaGCUCGGCGAa -3'
miRNA:   3'- -GAGCuUGUCG-GCuaGCU---------------UGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 45415 0.68 0.913383
Target:  5'- gUCGAGCAuaaacguGCCGcgcagguuguuuugcGcgUCGAACUCGGCGc -3'
miRNA:   3'- gAGCUUGU-------CGGC---------------U--AGCUUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 47011 0.7 0.8224
Target:  5'- --gGAGCuGCUGGUgGAGCgCGGCGAc -3'
miRNA:   3'- gagCUUGuCGGCUAgCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 54048 0.66 0.959942
Target:  5'- uCUCGGu--GCCGAacaCGAGgUCGGCGc -3'
miRNA:   3'- -GAGCUuguCGGCUa--GCUUgAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 55010 0.66 0.947973
Target:  5'- -aUGAAUaaGGCCuguuccuguUUGAGCUCGGCGAa -3'
miRNA:   3'- gaGCUUG--UCGGcu-------AGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 55861 0.7 0.804712
Target:  5'- gCUUGAGCAcGCCGAcUCGA-CUaCGGCGc -3'
miRNA:   3'- -GAGCUUGU-CGGCU-AGCUuGA-GCCGCu -5'
6760 5' -53.6 NC_001875.2 + 57303 0.66 0.959942
Target:  5'- -gCGAACGGgCGcgCGucgUCGGCGAc -3'
miRNA:   3'- gaGCUUGUCgGCuaGCuugAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 61599 0.7 0.821531
Target:  5'- gCUCGGGC-GCCGGcggcgcuUCGGGCugugUCGGCGGc -3'
miRNA:   3'- -GAGCUUGuCGGCU-------AGCUUG----AGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.