miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 5' -53.6 NC_001875.2 + 69246 0.67 0.923205
Target:  5'- gUCGAACGGCgcgcugggccgCGGcUCGAGCcguggCGGCGGc -3'
miRNA:   3'- gAGCUUGUCG-----------GCU-AGCUUGa----GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 69744 0.67 0.923205
Target:  5'- aUCGGGCGGCgaccugcugCGAaccaUUGAAUUUGGCGAc -3'
miRNA:   3'- gAGCUUGUCG---------GCU----AGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 72899 0.66 0.96347
Target:  5'- gUCGAACAagcuGCUGAUCcAACUC-GCGGc -3'
miRNA:   3'- gAGCUUGU----CGGCUAGcUUGAGcCGCU- -5'
6760 5' -53.6 NC_001875.2 + 73039 0.67 0.928649
Target:  5'- -gCGuGCAGCUGggCcAACUCGGCGc -3'
miRNA:   3'- gaGCuUGUCGGCuaGcUUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 82653 0.67 0.928649
Target:  5'- uUUGAAacguacaAGCUG-UCGuACUCGGCGAg -3'
miRNA:   3'- gAGCUUg------UCGGCuAGCuUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 82947 0.68 0.911577
Target:  5'- uCUCGGucgucGCGGCgGGcgCGucCUCGGCGAc -3'
miRNA:   3'- -GAGCU-----UGUCGgCUa-GCuuGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 85837 0.71 0.786381
Target:  5'- -gUGGGCGGCCGAUCcuGCUguugugcaCGGCGAg -3'
miRNA:   3'- gaGCUUGUCGGCUAGcuUGA--------GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 86889 0.66 0.959942
Target:  5'- aUCGGGCugcGCC--UCGAACUUGGCc- -3'
miRNA:   3'- gAGCUUGu--CGGcuAGCUUGAGCCGcu -5'
6760 5' -53.6 NC_001875.2 + 87492 0.67 0.928649
Target:  5'- -gCGAccGCuGcCCGAUCGAGCUaaaGGCGu -3'
miRNA:   3'- gaGCU--UGuC-GGCUAGCUUGAg--CCGCu -5'
6760 5' -53.6 NC_001875.2 + 89317 0.66 0.959942
Target:  5'- gUCGAGCGGCaCGA-CGGGCcucagcuuugCGGCGc -3'
miRNA:   3'- gAGCUUGUCG-GCUaGCUUGa---------GCCGCu -5'
6760 5' -53.6 NC_001875.2 + 96828 1.1 0.004322
Target:  5'- cCUCGAACAGCCGAUCGAACUCGGCGAg -3'
miRNA:   3'- -GAGCUUGUCGGCUAGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 102901 0.67 0.943508
Target:  5'- aUUGAGCGGCCGGccguugaagCGGAggUGGCGGa -3'
miRNA:   3'- gAGCUUGUCGGCUa--------GCUUgaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 103100 0.74 0.635927
Target:  5'- uCUUGGACAcGUCGAUCGuggcucGCUUGGCGGc -3'
miRNA:   3'- -GAGCUUGU-CGGCUAGCu-----UGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 104488 0.67 0.923205
Target:  5'- -cUGGugAGCCGcaugaugCGAGC-CGGCGAa -3'
miRNA:   3'- gaGCUugUCGGCua-----GCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 107938 0.67 0.933848
Target:  5'- -gCGGGCuGCaCGGUuuucacgugcaCGAAUUCGGCGAc -3'
miRNA:   3'- gaGCUUGuCG-GCUA-----------GCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 108239 0.66 0.966775
Target:  5'- uUCuGGCGGCCGGcUGGGCUgCGGCa- -3'
miRNA:   3'- gAGcUUGUCGGCUaGCUUGA-GCCGcu -5'
6760 5' -53.6 NC_001875.2 + 113339 0.71 0.786381
Target:  5'- uUCGuGCGGCgGGUCGGGCgCGGCu- -3'
miRNA:   3'- gAGCuUGUCGgCUAGCUUGaGCCGcu -5'
6760 5' -53.6 NC_001875.2 + 113759 0.67 0.923205
Target:  5'- -aCGAGCAGCCGccguaaugagGUCGcGCccgaagCGGCGGc -3'
miRNA:   3'- gaGCUUGUCGGC----------UAGCuUGa-----GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 113836 0.67 0.933848
Target:  5'- --gGAACAGCgGGUCGGGgUCGGg-- -3'
miRNA:   3'- gagCUUGUCGgCUAGCUUgAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 116859 0.69 0.870935
Target:  5'- aCUCGaAACAGUCGggCGugUUgGGCGAc -3'
miRNA:   3'- -GAGC-UUGUCGGCuaGCuuGAgCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.