miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 5' -53.6 NC_001875.2 + 943 0.67 0.933848
Target:  5'- -cCGGACGGCUG-UUGAACUCGcUGAg -3'
miRNA:   3'- gaGCUUGUCGGCuAGCUUGAGCcGCU- -5'
6760 5' -53.6 NC_001875.2 + 102901 0.67 0.943508
Target:  5'- aUUGAGCGGCCGGccguugaagCGGAggUGGCGGa -3'
miRNA:   3'- gAGCUUGUCGGCUa--------GCUUgaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 26797 0.66 0.946659
Target:  5'- -aCGAGCGGCUuAUCGGcaaccucaugaacaACUCGGUGu -3'
miRNA:   3'- gaGCUUGUCGGcUAGCU--------------UGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 19598 0.66 0.947973
Target:  5'- cCUCGAcCAGCUGGUC-AACUUGGg-- -3'
miRNA:   3'- -GAGCUuGUCGGCUAGcUUGAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 55010 0.66 0.947973
Target:  5'- -aUGAAUaaGGCCuguuccuguUUGAGCUCGGCGAa -3'
miRNA:   3'- gaGCUUG--UCGGcu-------AGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 24008 0.66 0.952198
Target:  5'- gUCGcaaggcGCA-CCGGgcgCGGGCUCGGCGGu -3'
miRNA:   3'- gAGCu-----UGUcGGCUa--GCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 7084 0.66 0.955015
Target:  5'- -aCGGGCGGCagcuacuacgugcgCGGcUCGGACggCGGCGAa -3'
miRNA:   3'- gaGCUUGUCG--------------GCU-AGCUUGa-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 3162 0.66 0.956186
Target:  5'- gUCGGGCGG-CGAguaggUGAGC-CGGCGGc -3'
miRNA:   3'- gAGCUUGUCgGCUa----GCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 89317 0.66 0.959942
Target:  5'- gUCGAGCGGCaCGA-CGGGCcucagcuuugCGGCGc -3'
miRNA:   3'- gAGCUUGUCG-GCUaGCUUGa---------GCCGCu -5'
6760 5' -53.6 NC_001875.2 + 87492 0.67 0.928649
Target:  5'- -gCGAccGCuGcCCGAUCGAGCUaaaGGCGu -3'
miRNA:   3'- gaGCU--UGuC-GGCUAGCUUGAg--CCGCu -5'
6760 5' -53.6 NC_001875.2 + 73039 0.67 0.928649
Target:  5'- -gCGuGCAGCUGggCcAACUCGGCGc -3'
miRNA:   3'- gaGCuUGUCGGCuaGcUUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 119464 0.72 0.747096
Target:  5'- -aCGAGCGGCacCGuggcacccucgucGUCGGGCUUGGCGAa -3'
miRNA:   3'- gaGCUUGUCG--GC-------------UAGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 113339 0.71 0.786381
Target:  5'- uUCGuGCGGCgGGUCGGGCgCGGCu- -3'
miRNA:   3'- gAGCuUGUCGgCUAGCUUGaGCCGcu -5'
6760 5' -53.6 NC_001875.2 + 55861 0.7 0.804712
Target:  5'- gCUUGAGCAcGCCGAcUCGA-CUaCGGCGc -3'
miRNA:   3'- -GAGCUUGU-CGGCU-AGCUuGA-GCCGCu -5'
6760 5' -53.6 NC_001875.2 + 11155 0.7 0.804712
Target:  5'- -aUGGACGGCCGGUCGA---UGGCGc -3'
miRNA:   3'- gaGCUUGUCGGCUAGCUugaGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 61599 0.7 0.821531
Target:  5'- gCUCGGGC-GCCGGcggcgcuUCGGGCugugUCGGCGGc -3'
miRNA:   3'- -GAGCUUGuCGGCU-------AGCUUG----AGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 47011 0.7 0.8224
Target:  5'- --gGAGCuGCUGGUgGAGCgCGGCGAc -3'
miRNA:   3'- gagCUUGuCGGCUAgCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 104488 0.67 0.923205
Target:  5'- -cUGGugAGCCGcaugaugCGAGC-CGGCGAa -3'
miRNA:   3'- gaGCUugUCGGCua-----GCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 9122 0.67 0.923205
Target:  5'- aCUCGGAC-GCCG--UGGACUCGcGCGc -3'
miRNA:   3'- -GAGCUUGuCGGCuaGCUUGAGC-CGCu -5'
6760 5' -53.6 NC_001875.2 + 69246 0.67 0.923205
Target:  5'- gUCGAACGGCgcgcugggccgCGGcUCGAGCcguggCGGCGGc -3'
miRNA:   3'- gAGCUUGUCG-----------GCU-AGCUUGa----GCCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.