miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6760 5' -53.6 NC_001875.2 + 103100 0.74 0.635927
Target:  5'- uCUUGGACAcGUCGAUCGuggcucGCUUGGCGGc -3'
miRNA:   3'- -GAGCUUGU-CGGCUAGCu-----UGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 113759 0.67 0.923205
Target:  5'- -aCGAGCAGCCGccguaaugagGUCGcGCccgaagCGGCGGc -3'
miRNA:   3'- gaGCUUGUCGGC----------UAGCuUGa-----GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 69744 0.67 0.923205
Target:  5'- aUCGGGCGGCgaccugcugCGAaccaUUGAAUUUGGCGAc -3'
miRNA:   3'- gAGCUUGUCG---------GCU----AGCUUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 82653 0.67 0.928649
Target:  5'- uUUGAAacguacaAGCUG-UCGuACUCGGCGAg -3'
miRNA:   3'- gAGCUUg------UCGGCuAGCuUGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 113836 0.67 0.933848
Target:  5'- --gGAACAGCgGGUCGGGgUCGGg-- -3'
miRNA:   3'- gagCUUGUCGgCUAGCUUgAGCCgcu -5'
6760 5' -53.6 NC_001875.2 + 10658 0.67 0.943508
Target:  5'- aCUUGGGCGGCgGAcUGcACUUGGCGc -3'
miRNA:   3'- -GAGCUUGUCGgCUaGCuUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 57303 0.66 0.959942
Target:  5'- -gCGAACGGgCGcgCGucgUCGGCGAc -3'
miRNA:   3'- gaGCUUGUCgGCuaGCuugAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 54048 0.66 0.959942
Target:  5'- uCUCGGu--GCCGAacaCGAGgUCGGCGc -3'
miRNA:   3'- -GAGCUuguCGGCUa--GCUUgAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 86889 0.66 0.959942
Target:  5'- aUCGGGCugcGCC--UCGAACUUGGCc- -3'
miRNA:   3'- gAGCUUGu--CGGcuAGCUUGAGCCGcu -5'
6760 5' -53.6 NC_001875.2 + 45415 0.68 0.913383
Target:  5'- gUCGAGCAuaaacguGCCGcgcagguuguuuugcGcgUCGAACUCGGCGc -3'
miRNA:   3'- gAGCUUGU-------CGGC---------------U--AGCUUGAGCCGCu -5'
6760 5' -53.6 NC_001875.2 + 124510 0.68 0.911577
Target:  5'- -cCGGGCAGCaGGUCGcugacguccacaAACUgCGGCGAg -3'
miRNA:   3'- gaGCUUGUCGgCUAGC------------UUGA-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 437 0.72 0.708096
Target:  5'- aCUCGAGCGuGCCG-UCGugcAC-CGGCGAg -3'
miRNA:   3'- -GAGCUUGU-CGGCuAGCu--UGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 128950 0.71 0.757835
Target:  5'- -aCGAGCGGCUaagGcgUGAGCUgGGCGAg -3'
miRNA:   3'- gaGCUUGUCGG---CuaGCUUGAgCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 85837 0.71 0.786381
Target:  5'- -gUGGGCGGCCGAUCcuGCUguugugcaCGGCGAg -3'
miRNA:   3'- gaGCUUGUCGGCUAGcuUGA--------GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 31988 0.71 0.795623
Target:  5'- -gCGuACGGCCGGUuugUGAGCggCGGCGAc -3'
miRNA:   3'- gaGCuUGUCGGCUA---GCUUGa-GCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 116859 0.69 0.870935
Target:  5'- aCUCGaAACAGUCGggCGugUUgGGCGAc -3'
miRNA:   3'- -GAGC-UUGUCGGCuaGCuuGAgCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 117330 0.69 0.878288
Target:  5'- gCUUGAcacggcGCGGCgCGggCGAAC-CGGCGGg -3'
miRNA:   3'- -GAGCU------UGUCG-GCuaGCUUGaGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 32781 0.69 0.881167
Target:  5'- cCUCGcGCGGCgUGggCGGgcgccgcgccggcaaGCUCGGCGAa -3'
miRNA:   3'- -GAGCuUGUCG-GCuaGCU---------------UGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 82947 0.68 0.911577
Target:  5'- uCUCGGucgucGCGGCgGGcgCGucCUCGGCGAc -3'
miRNA:   3'- -GAGCU-----UGUCGgCUa-GCuuGAGCCGCU- -5'
6760 5' -53.6 NC_001875.2 + 108239 0.66 0.966775
Target:  5'- uUCuGGCGGCCGGcUGGGCUgCGGCa- -3'
miRNA:   3'- gAGcUUGUCGGCUaGCUUGA-GCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.