Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6760 | 5' | -53.6 | NC_001875.2 | + | 69246 | 0.67 | 0.923205 |
Target: 5'- gUCGAACGGCgcgcugggccgCGGcUCGAGCcguggCGGCGGc -3' miRNA: 3'- gAGCUUGUCG-----------GCU-AGCUUGa----GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 69744 | 0.67 | 0.923205 |
Target: 5'- aUCGGGCGGCgaccugcugCGAaccaUUGAAUUUGGCGAc -3' miRNA: 3'- gAGCUUGUCG---------GCU----AGCUUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 104488 | 0.67 | 0.923205 |
Target: 5'- -cUGGugAGCCGcaugaugCGAGC-CGGCGAa -3' miRNA: 3'- gaGCUugUCGGCua-----GCUUGaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 82653 | 0.67 | 0.928649 |
Target: 5'- uUUGAAacguacaAGCUG-UCGuACUCGGCGAg -3' miRNA: 3'- gAGCUUg------UCGGCuAGCuUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 73039 | 0.67 | 0.928649 |
Target: 5'- -gCGuGCAGCUGggCcAACUCGGCGc -3' miRNA: 3'- gaGCuUGUCGGCuaGcUUGAGCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 87492 | 0.67 | 0.928649 |
Target: 5'- -gCGAccGCuGcCCGAUCGAGCUaaaGGCGu -3' miRNA: 3'- gaGCU--UGuC-GGCUAGCUUGAg--CCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 943 | 0.67 | 0.933848 |
Target: 5'- -cCGGACGGCUG-UUGAACUCGcUGAg -3' miRNA: 3'- gaGCUUGUCGGCuAGCUUGAGCcGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 107938 | 0.67 | 0.933848 |
Target: 5'- -gCGGGCuGCaCGGUuuucacgugcaCGAAUUCGGCGAc -3' miRNA: 3'- gaGCUUGuCG-GCUA-----------GCUUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 113836 | 0.67 | 0.933848 |
Target: 5'- --gGAACAGCgGGUCGGGgUCGGg-- -3' miRNA: 3'- gagCUUGUCGgCUAGCUUgAGCCgcu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 10658 | 0.67 | 0.943508 |
Target: 5'- aCUUGGGCGGCgGAcUGcACUUGGCGc -3' miRNA: 3'- -GAGCUUGUCGgCUaGCuUGAGCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 102901 | 0.67 | 0.943508 |
Target: 5'- aUUGAGCGGCCGGccguugaagCGGAggUGGCGGa -3' miRNA: 3'- gAGCUUGUCGGCUa--------GCUUgaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 26797 | 0.66 | 0.946659 |
Target: 5'- -aCGAGCGGCUuAUCGGcaaccucaugaacaACUCGGUGu -3' miRNA: 3'- gaGCUUGUCGGcUAGCU--------------UGAGCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 55010 | 0.66 | 0.947973 |
Target: 5'- -aUGAAUaaGGCCuguuccuguUUGAGCUCGGCGAa -3' miRNA: 3'- gaGCUUG--UCGGcu-------AGCUUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 19598 | 0.66 | 0.947973 |
Target: 5'- cCUCGAcCAGCUGGUC-AACUUGGg-- -3' miRNA: 3'- -GAGCUuGUCGGCUAGcUUGAGCCgcu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 24008 | 0.66 | 0.952198 |
Target: 5'- gUCGcaaggcGCA-CCGGgcgCGGGCUCGGCGGu -3' miRNA: 3'- gAGCu-----UGUcGGCUa--GCUUGAGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 7084 | 0.66 | 0.955015 |
Target: 5'- -aCGGGCGGCagcuacuacgugcgCGGcUCGGACggCGGCGAa -3' miRNA: 3'- gaGCUUGUCG--------------GCU-AGCUUGa-GCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 3162 | 0.66 | 0.956186 |
Target: 5'- gUCGGGCGG-CGAguaggUGAGC-CGGCGGc -3' miRNA: 3'- gAGCUUGUCgGCUa----GCUUGaGCCGCU- -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 89317 | 0.66 | 0.959942 |
Target: 5'- gUCGAGCGGCaCGA-CGGGCcucagcuuugCGGCGc -3' miRNA: 3'- gAGCUUGUCG-GCUaGCUUGa---------GCCGCu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 86889 | 0.66 | 0.959942 |
Target: 5'- aUCGGGCugcGCC--UCGAACUUGGCc- -3' miRNA: 3'- gAGCUUGu--CGGcuAGCUUGAGCCGcu -5' |
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6760 | 5' | -53.6 | NC_001875.2 | + | 54048 | 0.66 | 0.959942 |
Target: 5'- uCUCGGu--GCCGAacaCGAGgUCGGCGc -3' miRNA: 3'- -GAGCUuguCGGCUa--GCUUgAGCCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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